View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_high_4 (Length: 525)
Name: NF6124_high_4
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 184 - 506
Target Start/End: Original strand, 53147821 - 53148141
Alignment:
| Q |
184 |
attttaatgcattttaagttaagtgtgggcatcgaaatcatagatcttccaaaaattgaattggatcctctagaattttcagagtgcacattcttcaact |
283 |
Q |
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| T |
53147821 |
attttaatgcattttaagttaagtgtgggcatcgatatcatagatcttccaaaaattgaattggatcctctagaattttcagagtgcacattcttcaact |
53147920 |
T |
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| Q |
284 |
tacttcaattatactgcaggattttataacctctgaatcgtcacgatttcaatcgtcgataatcaagacatagaaacagagataaacatgaacaatgaaa |
383 |
Q |
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| T |
53147921 |
tacttcaattatactgcaggattttataacctctgaatcgtcacgatttcaatcatcgataatcaagacatagaaacagagataaacatgaacaatgaaa |
53148020 |
T |
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| Q |
384 |
ttcaaaggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaacattcattaatctcaattgagtgatgag |
483 |
Q |
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| T |
53148021 |
ttcaacggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaa----cattaatctcaattgagtgatgag |
53148116 |
T |
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| Q |
484 |
aaacataaa--tttaccttgcaagc |
506 |
Q |
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| T |
53148117 |
aaacataaatttttaccttgcaagc |
53148141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 53147626 - 53147787
Alignment:
| Q |
11 |
catcatcatgtttcccaagatctacagatagcaaaaagtatgagggatccagaaagtcaggaatgttgacgtatcactgatttttatttatttccgtatc |
110 |
Q |
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| T |
53147626 |
catcatcatgtttcccaagatctacagatagcaaaaagtatgagggatccagaaagtcaggaatgttgacgtatcactga-ttttatttatttccgtatc |
53147724 |
T |
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| Q |
111 |
atatcaatccctaaaatattttatcattacacaaaaaagtcacggaagcttcgttttatatca |
173 |
Q |
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| T |
53147725 |
atatcaatccctaaaatattttatcattacacaaaaaagtcacggaagcttcgttttatatca |
53147787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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