View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_high_5 (Length: 452)
Name: NF6124_high_5
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 175 - 434
Target Start/End: Original strand, 52036371 - 52036641
Alignment:
| Q |
175 |
tctttcacataattcttaatttcaaccataagctaaaatcaacttcatcaattcaatacagctactacccttg------ttgattgcaacttcaattctt |
268 |
Q |
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| T |
52036371 |
tctttcacataattcttaatttcaaccataagctaaaaacaacttcatcaattcaatacagctactacccttgttcttgttgattgcaacttcaattctt |
52036470 |
T |
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| Q |
269 |
tgctgtttcaaattcaaggtgagttcgtttactttccttttttctcgttgggttaactaattagtagtagtaatttactgatgcatgcatgattctgcca |
368 |
Q |
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| T |
52036471 |
tgctgtttcaaattcaaggtgagttcgtttactttccttttttctcgttgggttaactaattagtagtagtaatttactgatgcatgcatgattctgcca |
52036570 |
T |
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| Q |
369 |
cacttattgatgttgctt-----acataacatgacataacatttttaggaaggatcaaatgacaaaagaag |
434 |
Q |
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| T |
52036571 |
cacttattgatgttgcttacataacataacataacataacatttttaggaaggatcaaatgacaaaagaag |
52036641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 52036231 - 52036374
Alignment:
| Q |
1 |
caaaaagaagagtttagtagtcaaaaaatgagacagcggccaaagcaaaagatgaaagaagggaggcgtacaaaaataagaaactgactcttcctatctc |
100 |
Q |
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| T |
52036231 |
caaaaagaagagtttaggagtcaaaaaatgagacagcggccaaagcaaaagatgaaagaagggaggcgtacaaaaataagaaactgactcttcctatctc |
52036330 |
T |
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| Q |
101 |
tatgcatttaaattcttttggttttattcattccccatcttctt |
144 |
Q |
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| T |
52036331 |
tatgcatttaaattcttttggttttattcattccccatcttctt |
52036374 |
T |
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