View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6124_high_9 (Length: 373)
Name: NF6124_high_9
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 20168970 - 20168609
Alignment:
| Q |
1 |
gctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20168970 |
gctttcttcactctatgtcacctgatccctttctcctctacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaa |
20168871 |
T |
|
| Q |
101 |
cattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaaggattgaattgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20168870 |
cattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaaggattgaattgat |
20168771 |
T |
|
| Q |
201 |
ttttaaattgaca--------aagtttaacactgttaatcctttagagactgattcatggtattcttcttcctcacatgaactccatcgtgatccctcat |
292 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
20168770 |
ttttaaattgacaatcctgttaagtttaacactgataatcctttagagactgattcatggtattcttcttcctcacatgaactccatcgtgacccctcat |
20168671 |
T |
|
| Q |
293 |
gttcctctcgccgtcgatgtcgccgctcacctttcatgccatcgatgatcccaaccaccatg |
354 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20168670 |
gttcctctcgccgtcgatgccgccgctcacctttcatgccatcgatgatcccaaccaccatg |
20168609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28583805 - 28584006
Alignment:
| Q |
1 |
gctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaa |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || || ||| |
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|
| T |
28583805 |
gctttctccactcttgatcacctgatccctttctcctccacctccttcattcccctttcaatttcc-agtttcattgcaaaatccataacc--aca---- |
28583897 |
T |
|
| Q |
101 |
cattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa-ggattgaattga |
199 |
Q |
| |
|
||||||| ||||||||| | |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
28583898 |
-attttgacgagattaatcat----aacataggatctttctaaaattgaagaaaaaattaattaattaaaattagaatcacaacaaagggattgaa-tga |
28583991 |
T |
|
| Q |
200 |
tttttaaattgacaa |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
28583992 |
attttaaattgacaa |
28584006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 9391849 - 9391886
Alignment:
| Q |
26 |
tccctttctcctccacctccttcattcccctttcaatt |
63 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9391849 |
tccctttctcctccacctttttcattcccctttcaatt |
9391886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 44390679 - 44390318
Alignment:
| Q |
1 |
gctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44390679 |
gctttcttcactctatgtcacctgatccctttctcctctacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaa |
44390580 |
T |
|
| Q |
101 |
cattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaaggattgaattgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44390579 |
cattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaaggattgaattgat |
44390480 |
T |
|
| Q |
201 |
ttttaaattgaca--------aagtttaacactgttaatcctttagagactgattcatggtattcttcttcctcacatgaactccatcgtgatccctcat |
292 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
44390479 |
ttttaaattgacaatcctgttaagtttaacactgataatcctttagagactgattcatggtattcttcttcctcacatgaactccatcgtgacccctcat |
44390380 |
T |
|
| Q |
293 |
gttcctctcgccgtcgatgtcgccgctcacctttcatgccatcgatgatcccaaccaccatg |
354 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44390379 |
gttcctctcgccgtcgatgccgccgctcacctttcatgccatcgatgatcccaaccaccatg |
44390318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 26582563 - 26582378
Alignment:
| Q |
17 |
gtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaaca-ttttgatgagatt |
115 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||| || || ||| || |||||| ||||||||||||| |
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|
| T |
26582563 |
gtcacctaatctctttctcctccacctccttcattctcctctcaatttcccaatttcattgcaaa-tccataaca--acttgaacaattttgatgagatt |
26582467 |
T |
|
| Q |
116 |
aattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa-ggattgaattgatttt |
203 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||| |||||| |
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|
| T |
26582466 |
aattaattaaaactgagagtctttctaaaattgaagaacgaattaattagataaaattagaatcacaacaaatggattaaatggatttt |
26582378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 44095953 - 44095740
Alignment:
| Q |
1 |
gctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaa |
100 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | |
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|
| T |
44095953 |
gcttttttcactctatgtcacttgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctataaccacataaaat |
44095854 |
T |
|
| Q |
101 |
cattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa-ggattgaattga |
199 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||| ||||||| ||||||||||||||||||| ||| ||||||| |||||||| ||| |
|
|
| T |
44095853 |
gattttgatgagattacttaattgaaacatgaaatctttctaaaactgaagaagaaattaattaattaaaattgaaattgcaacaaagggattgaa-tga |
44095755 |
T |
|
| Q |
200 |
tttttaaattgacaa |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44095754 |
attttaaattgacaa |
44095740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2398209 - 2398007
Alignment:
| Q |
1 |
gctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatgaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || || || |
|
|
| T |
2398209 |
gctttcttcactcttggtcacctgatccctttctcctccacctccttcattcccctttcaattttccagtttcattgcaaaatccataaccata------ |
2398116 |
T |
|
| Q |
101 |
cattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa-ggattgaattga |
199 |
Q |
| |
|
||||||| ||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
2398115 |
-attttgacgagattaatca----taacgtaggatctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaagggattgaa-tga |
2398022 |
T |
|
| Q |
200 |
tttttaaattgacaa |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2398021 |
attttaaattgacaa |
2398007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 38823410 - 38823503
Alignment:
| Q |
94 |
acatgaaca-ttttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaa |
186 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38823410 |
acatgaacaattttgatgagattaattaattaacactgagagtctttctaaaattgaagaacaaattaattagataaaattagaatcacaacaa |
38823503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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