View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_low_10 (Length: 355)
Name: NF6124_low_10
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_10 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 36 - 337
Target Start/End: Complemental strand, 2345510 - 2345206
Alignment:
| Q |
36 |
ggtagaagttttgttttgatttatttgtgaagtgataatatctccnnnnnnnnn--gttggtacaacacaatcttccattcttacttcttactaatcatt |
133 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345510 |
ggtagaagttttgttttgatttatttgtgaagtgataatatctcctttttttttttgttggtacaacacaatcttccattcttacttcttactaatcatt |
2345411 |
T |
|
| Q |
134 |
tttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgaagacttcttattaatca-nnnnnnnnaattgtcatgt |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2345410 |
tttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgaagacttcttattaatcatttttttttaattgtcatgt |
2345311 |
T |
|
| Q |
233 |
taggggtgtataattcttgctattgtttgctgaactttgattaacaattttgccaaactttaatttacaaggtcgaatccagcattagcagcgctacatg |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345310 |
taggggtgtataattcttgctattgtttgctgaactttgattaacaattttgccaaactttaatttacaaggtcgaatccagcattagcagcgctacatg |
2345211 |
T |
|
| Q |
333 |
tttga |
337 |
Q |
| |
|
||||| |
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|
| T |
2345210 |
tttga |
2345206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 37 - 337
Target Start/End: Complemental strand, 30320343 - 30320043
Alignment:
| Q |
37 |
gtagaagttttgttttgatttatttgtgaagtgataatatctccnnnnnnnnn--gttggtacaacacaatcttccattcttacttcttactaatcattt |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30320343 |
gtagaagttttgttttgatttatttgtgaagtgataatatctccttcttttttttgttggtacaacacaatcttccattcttacttcttactaatcattt |
30320244 |
T |
|
| Q |
135 |
ttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgaagacttcttattaatcannnnnnnnaattgtcatgtta |
234 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
30320243 |
ttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgtagacttcttattaatca-tttttttaattgtcatgtta |
30320145 |
T |
|
| Q |
235 |
ggggtgtataattcttgctattgtttgctgaactttgattaacaattttgccaaactttaatttacaaggtcgaatccagcattagcagcgctacatgtt |
334 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
30320144 |
ggggtgtataattcttgctattatttgctgaactttgattaacatttttgccaaactttgatttac-aggtcgaatccagcattagcagcgctacatgtt |
30320046 |
T |
|
| Q |
335 |
tga |
337 |
Q |
| |
|
||| |
|
|
| T |
30320045 |
tga |
30320043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 46 - 337
Target Start/End: Complemental strand, 3647944 - 3647655
Alignment:
| Q |
46 |
ttgttttgatttatttgtgaagtgataatatctccnnnnnnnnn-gttggtacaacacaatcttccattcttacttcttactaatcatttttaaaaatta |
144 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3647944 |
ttgttttgatttatttgtgaaatgataatatctccttttttttttgtcggtacaacacaatcttccattcttacttcttactaatcatttttaaaaatta |
3647845 |
T |
|
| Q |
145 |
taatatacattgatttcgttttaattctaatcgatctaatggatgaatttgaagacttcttattaatcannnnnnnnaattgtcatgttaggggtgtata |
244 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |
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| T |
3647844 |
taatatacattgatttcgttttaattctaatcgatctaatggatgaatttgtagacaa-ttattaatcattttttt-aattgtcatgttaggggtgtata |
3647747 |
T |
|
| Q |
245 |
attcttgctattgtttgctgaactttgattaacaattttgccaaactttaatttacaaggtcgaatccagcattagcagcgctacatgtttga |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3647746 |
attcttgctattgtttgctgaactttgattaacaattttgccaaactttgatttac-aggtcgaatccagcattagcagcgctacatgtttga |
3647655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 337
Target Start/End: Original strand, 25336491 - 25336784
Alignment:
| Q |
36 |
ggtagaagttttgttttgatttatttgtgaagtgataatatctccnnnnnnnnn-gttggtacaacacaatcttccattcttacttcttactaatcattt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| |
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| T |
25336491 |
ggtagaagttttgttttgatttatttgtgaagtgataatatctccttttttttttgttggtacaacacaatcttccaatcttact-------aatcattt |
25336583 |
T |
|
| Q |
135 |
ttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgaagacttcttattaatcannnnnnnnaattgtcatgtta |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
25336584 |
ttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgtagacttcttattaatcattttttt-aattgtcatgtta |
25336682 |
T |
|
| Q |
235 |
ggggtgtataattcttgctattgtttgctgaactttgattaacaattttgccaaactttaatttacaaggtcgaatccagcattagcagcgctacatgtt |
334 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |
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| T |
25336683 |
ggggtgtataattcttgctattgtttgcggaactttgattaacaattttgccaaactttgatttac-aggtcaaatccagcattagcagcgctacatgtt |
25336781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 327
Target Start/End: Original strand, 36355 - 36572
Alignment:
| Q |
90 |
gttggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatg |
189 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| || |||||||||||||||||||| | ||||||||||||||||||| | ||| |
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|
| T |
36355 |
gttggtactacacaatctgtcattcttacttcatattaatcatttttaaaaattatta---------atttcgttttaattctaat---------gaatg |
36436 |
T |
|
| Q |
190 |
aatttgaagacttcttattaatcannnnnnnnaattgtcatgttaggggtgtataattcttgctattgtttgctgaactttgattaacaattttgccaaa |
289 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
36437 |
aatttgtagacttcttattaatcatttttt--aattgttgtattaggggtgtataattcttgctattgtttgcttaactttgattaacaattttgccaaa |
36534 |
T |
|
| Q |
290 |
ctttaatttacaaggtcgaatccagcattagcagcgct |
327 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||||| |
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|
| T |
36535 |
ctttgatttacaaggtggaatccagcatttgcagcgct |
36572 |
T |
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