View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6124_low_13 (Length: 290)
Name: NF6124_low_13
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 1758237 - 1758512
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758237 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatcaggaga |
1758336 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758337 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
1758436 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
1758437 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatctttttttgatttggaataatgggttttgtttgttttttgt |
1758512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 29568380 - 29568110
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29568380 |
tcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtaga |
29568281 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29568280 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcattggtat |
29568181 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnnga-tttggaataatgggttttgtttgtt |
270 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
29568180 |
gtgttgaaacatgtgtttcttgctaaaaaagtaatcttttttttattttggaataatgggttttgtttgtt |
29568110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29168344 - 29168579
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29168344 |
tcttagctgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtaga |
29168443 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29168444 |
tgtatatctgaagttattgatccttctaaggttaaagaagcagttgctctttatttgaactcttctgaaagaaccacccctgaatctgattcaatggtat |
29168543 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatc |
236 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29168544 |
gtgttgaaaattgtgtttcttgctaaaaaagtaatc |
29168579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 27918747 - 27918974
Alignment:
| Q |
9 |
gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc |
108 |
Q |
| |
|
||||||| || ||||||||||| | ||||||||||||||||||||| |||||| ||| |||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
27918747 |
gctgtgtatccgatccatgcactttgccagatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtatatc |
27918846 |
T |
|
| Q |
109 |
tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27918847 |
tgaagttattgatccttctgaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtgtgtgttgaa |
27918946 |
T |
|
| Q |
209 |
acttgtgtttcttgctaaaaaagtaatc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
27918947 |
acttgtgtttcttgctaaaaaagtaatc |
27918974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29425385 - 29425630
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29425385 |
tcttagccgctgtgtctctgatccatgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagtaga |
29425484 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
29425485 |
tgtatatatgaagttattgatccttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaactacacctgaatctgattcattggtat |
29425584 |
T |
|
| Q |
201 |
gtgt----------tgaaacttgtgtttcttgctaaaaaagtaatc |
236 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29425585 |
gtgttggattattatgaaacttgtgtttcttgctaaaaaagtaatc |
29425630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38157359 - 38157592
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||| ||||||||||| ||| |||||| || ||| ||||||||||| ||||| |||||| |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
38157359 |
tcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcaggaga |
38157456 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
38157457 |
tgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggtat |
38157556 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatc |
236 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
38157557 |
gtgttgaaacttgtttttcttgctaaaatagtaatc |
38157592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 18986189 - 18986465
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986189 |
tcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggaga |
18986288 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18986289 |
tgtatatctgaagttattgatccgtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaaaaccacccttgaatctgattcaatggtat |
18986388 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
18986389 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatcttttttttgacttggaataatgggttttgtttgttttttgt |
18986465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 27462089 - 27462364
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
27462089 |
tcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcaga |
27462188 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27462189 |
tgtatatctgaagttattgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtat |
27462288 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
27462289 |
gtgttgaaacttgtgtttcttgctaaaaaagtaaactttttttgatttggaatattgggttttgtttgttttttgt |
27462364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 27521346 - 27521077
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||| ||| |
|
|
| T |
27521346 |
tcttagccgctgtgtctctgatccttgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatcagcaga |
27521247 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27521246 |
tgtatatctgaagttattgatccttttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaaaaccacccctgaatctgattcaatggtat |
27521147 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgtt |
270 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
27521146 |
gtgttgaaacttgtgtttcttgataaaaaagtactctttttttgatttggaataatgggttttgtttgtt |
27521077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 27482228 - 27482504
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
27482228 |
tcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcaga |
27482327 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
200 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482328 |
tgtatatctgaagttatcgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtat |
27482427 |
T |
|
| Q |
201 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
27482428 |
gtgttgaaacttgtgtttcttgctaaaaaagtaatcttttttttaatttggaataatgggttttgtttgttttttgt |
27482504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 25518581 - 25518808
Alignment:
| Q |
9 |
gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc |
108 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||| | || ||||| |||||| ||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
25518581 |
gctgtgtcgctgatccatgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatcaggagatgtatatc |
25518680 |
T |
|
| Q |
109 |
tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518681 |
tgaagttattgatcctttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa |
25518780 |
T |
|
| Q |
209 |
acttgtgtttcttgctaaaaaagtaatc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
25518781 |
acttgtgtttcttgctaaaaaagtaatc |
25518808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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