View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_low_14 (Length: 288)
Name: NF6124_low_14
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 8726327 - 8726043
Alignment:
| Q |
1 |
gaacgatggttaactgaatctttctcaa-----------atatgaaggttatgtagacatcagacttagtcaaaactcaacggaactcaataattaggaa |
89 |
Q |
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| T |
8726327 |
gaacgatggttaactgaatctttctcaagtctaataaatatatgaaggttatgtagacattagacttagtcaaaactcaaccgaactcaataattaggaa |
8726228 |
T |
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| Q |
90 |
tttaactcgtgatttatgtttatagtgcctctaactaaaggaagtgatgagaatggaggaacattatgcgcagagttgtgcacatgagacttgtgtcaaa |
189 |
Q |
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| T |
8726227 |
tttaactcgtgattcatgtttacagtgcctctaactaaaggaagtgatgagaatggaggaacattatgcgcagagttgtgcgcatgagacttgtgtcaaa |
8726128 |
T |
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| Q |
190 |
atatcatgccgtgcaatggaaggatgctagtgtgttgcctcaaaaacgaaagttaacactgcatttaagtacgatgttttccccc |
274 |
Q |
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| T |
8726127 |
atatcatgccgtgcaatggaaggatgctagtgtgttgcctcaaaaacgaaagttaacactgcatttaagtataatgtttttcccc |
8726043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 8686623 - 8686382
Alignment:
| Q |
29 |
atatgaaggttatgtagacatcagacttagtcaaaactcaacggaactcaataattaggaatttaactcgtgatttatgtt-tatagtgcctctaactaa |
127 |
Q |
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| T |
8686623 |
atatgaaggtcatgtagacaacatacttagtcaaaactcaacggaactcgataattaggaatttaactcgtgatccatgttatatagtgcctctaactga |
8686524 |
T |
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| Q |
128 |
aggaagtgatgagaatggaggaacattatgcgcagagttgtgcacatgagacttgtgtcaaaatatcatgccgtgcaatggaaggatgctagtgtgttgc |
227 |
Q |
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| T |
8686523 |
aggaagcgatgagaatggaggaacgttatgtggagagatgtgcacatgaggcttgcgtcaagagatcgttccatgaaatggaaagatgctagtgtgttgc |
8686424 |
T |
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| Q |
228 |
ctcaaaaacgaaagttaacactgcatttaagtacgatgtttt |
269 |
Q |
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| T |
8686423 |
ctcaaaaacgaaagttaacaccacatttaagtaatatgtttt |
8686382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 23432085 - 23432327
Alignment:
| Q |
29 |
atatgaaggttatgtagacatcagacttagtcaaaactcaacggaactcaataattaggaatttaactcgtgatttatgtt-tatagtgcctctaactaa |
127 |
Q |
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|||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||| |||| | |
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| T |
23432085 |
atatgaaggtcatgtagacaacatacttagtcaaaactcaacggaactcgataattaggaatttaactcatgatccatgttatatagtgcctcaaactga |
23432184 |
T |
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| Q |
128 |
aggaagtgatgagaatggaggaacattatgcgcagagttgtgcacatgagacttgtgtcaaaatatcatgccgtgcaatggaaggatgctagtgtgttgc |
227 |
Q |
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|||||| ||||||||||||||||| ||||| | |||| |||||||||||| ||| ||||| | ||| ||||||| ||||||| |||||||||||||| | |
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| T |
23432185 |
aggaagcgatgagaatggaggaacgttatgtggagagatgtgcacatgaggtttgcgtcaagagatcgtgccgtgaaatggaaagatgctagtgtgtttc |
23432284 |
T |
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| Q |
228 |
ctc-aaaaacgaaagttaacactgcatttaagtacgatgtttt |
269 |
Q |
| |
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||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
23432285 |
ctcaaaaaacgaaagttaacaccagatttaagtaatatgtttt |
23432327 |
T |
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