View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6124_low_2 (Length: 639)

Name: NF6124_low_2
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6124_low_2
NF6124_low_2
[»] chr6 (11 HSPs)
chr6 (15-623)||(31493926-31494534)
chr6 (15-623)||(31499312-31499920)
chr6 (15-509)||(31472743-31473236)
chr6 (15-509)||(31513836-31514331)
chr6 (565-623)||(31514371-31514429)
chr6 (555-623)||(31473265-31473330)
chr6 (536-567)||(18771776-18771807)
chr6 (536-569)||(8549930-8549963)
chr6 (537-569)||(1338851-1338883)
chr6 (536-568)||(2564764-2564796)
chr6 (536-568)||(9661751-9661783)
[»] chr1 (10 HSPs)
chr1 (35-413)||(35765228-35765603)
chr1 (536-569)||(51787844-51787877)
chr1 (536-567)||(24230946-24230977)
chr1 (536-567)||(32710120-32710151)
chr1 (536-567)||(34038540-34038571)
chr1 (536-570)||(6526804-6526838)
chr1 (536-569)||(2249942-2249975)
chr1 (536-569)||(31075986-31076019)
chr1 (536-568)||(12105535-12105567)
chr1 (536-564)||(45767686-45767714)
[»] chr7 (7 HSPs)
chr7 (536-570)||(30891275-30891309)
chr7 (536-567)||(35357701-35357732)
chr7 (536-565)||(15954133-15954162)
chr7 (537-574)||(24505116-24505153)
chr7 (536-568)||(18519913-18519945)
chr7 (536-568)||(26605430-26605462)
chr7 (542-570)||(42583760-42583788)
[»] scaffold0194 (1 HSPs)
scaffold0194 (538-574)||(17871-17907)
[»] chr3 (3 HSPs)
chr3 (536-568)||(40021078-40021110)
chr3 (536-567)||(16136998-16137029)
chr3 (536-569)||(50412448-50412481)
[»] chr5 (4 HSPs)
chr5 (536-567)||(38293623-38293654)
chr5 (536-569)||(25929558-25929591)
chr5 (536-568)||(36339222-36339254)
chr5 (536-564)||(36428283-36428311)
[»] chr4 (8 HSPs)
chr4 (536-567)||(29581967-29581998)
chr4 (536-567)||(32846029-32846060)
chr4 (536-567)||(33491537-33491568)
chr4 (538-567)||(352850-352879)
chr4 (538-567)||(56104779-56104808)
chr4 (536-568)||(42177716-42177748)
chr4 (536-568)||(50383705-50383737)
chr4 (536-568)||(53936888-53936920)
[»] chr2 (7 HSPs)
chr2 (536-567)||(6945340-6945371)
chr2 (536-567)||(42849703-42849734)
chr2 (536-565)||(38064660-38064689)
chr2 (536-564)||(3260965-3260993)
chr2 (536-568)||(4049336-4049368)
chr2 (542-570)||(43359101-43359129)
chr2 (536-568)||(45157529-45157561)
[»] scaffold0184 (1 HSPs)
scaffold0184 (536-568)||(16958-16990)
[»] scaffold0078 (1 HSPs)
scaffold0078 (536-568)||(55854-55886)
[»] chr8 (1 HSPs)
chr8 (536-568)||(9497537-9497569)


Alignment Details
Target: chr6 (Bit Score: 556; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 15 - 623
Target Start/End: Original strand, 31493926 - 31494534
Alignment:
Q  15 tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31493926 tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt 31494025  T
Q  115 tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31494026 tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttattatcagtt 31494125  T
Q  215 tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31494126 tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaattttaaatcaatataaaactac 31494225  T
Q  315 aaatatttgaaaatataataatttcaagggttcacaactatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctcg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31494226 aaatatttgaaaatataataatttcaagggttcacaactatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcaatctcg 31494325  T
Q  415 ttttaaattgtaaatcttacatgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagnnnnn 514  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  31494326 ttttaaattgtaaatcttacatgaatttaaggttggacaaacaataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagaaaaa 31494425  T
Q  515 nntatctacccataatattagtcaaatatattggatgtaccatagaatttgccaattaaatcacccctcaccctaattctttctttgtcgttagtaactt 614  Q
      ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31494426 aatatctacccataatattagtcaaatatatcgggtgtaccatagaatttgccaattaaatcacccctcaccctaattcttcctttgtcgttagtaactt 31494525  T
Q  615 atgttagtg 623  Q
    |||||||||    
T  31494526 atgttagtg 31494534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 15 - 623
Target Start/End: Original strand, 31499312 - 31499920
Alignment:
Q  15 tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31499312 tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt 31499411  T
Q  115 tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31499412 tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt 31499511  T
Q  215 tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31499512 tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaattttaaatcaatataaaactac 31499611  T
Q  315 aaatatttgaaaatataataatttcaagggttcacaactatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctcg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31499612 aaatatttgaaaatataataatttcaagggttcacaactatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcaatctcg 31499711  T
Q  415 ttttaaattgtaaatcttacatgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagnnnnn 514  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  31499712 ttttaaattgtaaatcttacatgaatttaaggttggacaaacaataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagaaaaa 31499811  T
Q  515 nntatctacccataatattagtcaaatatattggatgtaccatagaatttgccaattaaatcacccctcaccctaattctttctttgtcgttagtaactt 614  Q
      |||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31499812 aatatctacccataatattagtcaaatatatcaggtgtaccatagaatttgccaattaaatcacccctcaccctaattcttcctttgtcgttagtaactt 31499911  T
Q  615 atgttagtg 623  Q
    |||||||||    
T  31499912 atgttagtg 31499920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 15 - 509
Target Start/End: Original strand, 31472743 - 31473236
Alignment:
Q  15 tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31472743 tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt 31472842  T
Q  115 tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31472843 tataatataaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt 31472942  T
Q  215 tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31472943 tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac 31473042  T
Q  315 aaatatttgaaaatataataatttcaagggttcacaactatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctcg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||     
T  31473043 aaatatttgaaaatataataatttcaagggttcacaactatatata-actaccatagtaagaacatatttaatctcaaatattcccaaatttcactctca 31473141  T
Q  415 ttttaaattgtaaatcttacatgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagag 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31473142 ttttaaattgtaaatcttacatgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagag 31473236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 15 - 509
Target Start/End: Original strand, 31513836 - 31514331
Alignment:
Q  15 tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31513836 tcatattgtcgaattgtatattttaaaactttattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt 31513935  T
Q  115 tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttacta-tcagt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |    
T  31513936 tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcgtcctataaatttaattcattattcatgttactaatcaat 31514035  T
Q  214 ttcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaacta 313  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  31514036 ttcttagattgtttaattcgaatctattagtgattaaacctttatccttgagataatccttaattcatctcttagtgaatttaaaatcaatataaaactt 31514135  T
Q  314 caaatatttgaaaatataataatttcaagggttcacaactatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31514136 caaatatttgaaaatataataatttcaagggttcacaactatatatagactacaatagtaagaacatatttaatctcaaatattcacaaatttcactctc 31514235  T
Q  414 gttttaaattgtaaatcttacatgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagag 509  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31514236 gttttaaattgtaaatcttacatgaattcaaggttggacaaacgataataagcattaaggtcatgttttgtcgatacaactcatccataacaagag 31514331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 565 - 623
Target Start/End: Original strand, 31514371 - 31514429
Alignment:
Q  565 gccaattaaatcacccctcaccctaattctttctttgtcgttagtaacttatgttagtg 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31514371 gccaattaaatcacccctcaccctaattctttctttgtcgttagtaacttatgttagtg 31514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 555 - 623
Target Start/End: Original strand, 31473265 - 31473330
Alignment:
Q  555 catagaatttgccaattaaatcacccctcaccctaattctttctttgtcgttagtaacttatgttagtg 623  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||| |||||||    
T  31473265 catagaatttgccaattaaattacccctcacccta---ctttctttgtcgttagtaacttacgttagtg 31473330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Complemental strand, 18771807 - 18771776
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  18771807 tcaaatatattggatgtaccatagaatttgcc 18771776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 8549930 - 8549963
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaa 569  Q
    ||||||||||||| ||||||||||||||||||||    
T  8549930 tcaaatatattgggtgtaccatagaatttgccaa 8549963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 569
Target Start/End: Complemental strand, 1338883 - 1338851
Alignment:
Q  537 caaatatattggatgtaccatagaatttgccaa 569  Q
    ||||| |||||||||||||||||||||||||||    
T  1338883 caaatttattggatgtaccatagaatttgccaa 1338851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 2564796 - 2564764
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    |||||||||||| ||||||||||||||||||||    
T  2564796 tcaaatatattgaatgtaccatagaatttgcca 2564764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 9661783 - 9661751
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  9661783 tcaaatatattgggtgtaccatagaatttgcca 9661751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 35 - 413
Target Start/End: Original strand, 35765228 - 35765603
Alignment:
Q  35 ttttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttg-ctactacgaaaattgaataaaagtcggttataatctaaatgtgttag 133  Q
    ||||| |||||| ||||| |||||| ||||||| |||||||||||||||||  | || |||||| |||||||||||||   ||||||  |||||| | ||    
T  35765228 ttttagaacttagttgaagaaaaaggtacgagtatgttgtttgtaatttttttcaacaacgaaacttgaataaaagtcaactataataaaaatgtttcag 35765327  T
Q  134 c-atgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtttcttagattgtttaattc 232  Q
      ||||||| | ||||||||| |||||| |||||||||||| || ||||||  | |||||||| |||||||| |||| |||||  |||||||| ||||||    
T  35765328 ggatgagtatgacttggttactaactttgcactattaatctgattctataagctgaattcattcttcatgttgctattagttttctagattgtgtaattc 35765427  T
Q  233 taatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaac-tacaaatatttgaaaatata 331  Q
    || ||| |  | || ||||||||||||||||||||||||| ||    |||| ||||||||||||||||||| || |||| || |||||||||||| ||||    
T  35765428 tagtctctcagcgactaaacctttaaccttgagataaccccta----atcttttagtgaatttaaaatcaagattaaacatataaatatttgaaattata 35765523  T
Q  332 ataatttcaagggttcacaactatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctc 413  Q
    || || | |||||||| || |||| |  | |||||||  | |  || ||||||||||||||| ||||| ||||| |||||||    
T  35765524 atgatgtgaagggttcgcatctatctcaaaactacgaaggca--aaaatatttaatctcaaacattcataaattccactctc 35765603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 51787844 - 51787877
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaa 569  Q
    ||||||||||||||||||||||||||||||||||    
T  51787844 tcaaatatattggatgtaccatagaatttgccaa 51787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 24230946 - 24230977
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  24230946 tcaaatatattggatgtaccatagaatttgcc 24230977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 32710120 - 32710151
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  32710120 tcaaatatattggatgtaccatagaatttgcc 32710151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 34038540 - 34038571
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  34038540 tcaaatatattggatgtaccatagaatttgcc 34038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 570
Target Start/End: Original strand, 6526804 - 6526838
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaat 570  Q
    ||||||||||||| |||||||||||||||||||||    
T  6526804 tcaaatatattgggtgtaccatagaatttgccaat 6526838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 2249942 - 2249975
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaa 569  Q
    ||||||||| ||||||||||||||||||||||||    
T  2249942 tcaaatatagtggatgtaccatagaatttgccaa 2249975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 31075986 - 31076019
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaa 569  Q
    ||||||||||||| ||||||||||||||||||||    
T  31075986 tcaaatatattgggtgtaccatagaatttgccaa 31076019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 12105535 - 12105567
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  12105535 tcaaatatattgggtgtaccatagaatttgcca 12105567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 564
Target Start/End: Complemental strand, 45767714 - 45767686
Alignment:
Q  536 tcaaatatattggatgtaccatagaattt 564  Q
    |||||||||||||||||||||||||||||    
T  45767714 tcaaatatattggatgtaccatagaattt 45767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 570
Target Start/End: Complemental strand, 30891309 - 30891275
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaat 570  Q
    |||||||||||||||||||||||||||||||||||    
T  30891309 tcaaatatattggatgtaccatagaatttgccaat 30891275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Complemental strand, 35357732 - 35357701
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  35357732 tcaaatatattggatgtaccatagaatttgcc 35357701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Complemental strand, 15954162 - 15954133
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttg 565  Q
    ||||||||||||||||||||||||||||||    
T  15954162 tcaaatatattggatgtaccatagaatttg 15954133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 574
Target Start/End: Complemental strand, 24505153 - 24505116
Alignment:
Q  537 caaatatattggatgtaccatagaatttgccaattaaa 574  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  24505153 caaatttattgggtgtaccatagaatttgccaattaaa 24505116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 18519945 - 18519913
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||| |||||||||||||||||||||||    
T  18519945 tcaaatatagtggatgtaccatagaatttgcca 18519913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 26605430 - 26605462
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  26605430 tcaaatatattgggtgtaccatagaatttgcca 26605462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 570
Target Start/End: Complemental strand, 42583788 - 42583760
Alignment:
Q  542 atattggatgtaccatagaatttgccaat 570  Q
    |||||||||||||||||||||||||||||    
T  42583788 atattggatgtaccatagaatttgccaat 42583760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 574
Target Start/End: Original strand, 17871 - 17907
Alignment:
Q  538 aaatatattggatgtaccatagaatttgccaattaaa 574  Q
    |||| ||||||||||||||||||||||||||||||||    
T  17871 aaatttattggatgtaccatagaatttgccaattaaa 17907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 40021110 - 40021078
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    |||||||||||||||||||||||||||||||||    
T  40021110 tcaaatatattggatgtaccatagaatttgcca 40021078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 16136998 - 16137029
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  16136998 tcaaatatattggatgtaccatagaatttgcc 16137029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 50412448 - 50412481
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaa 569  Q
    ||||||||||||| ||||||||||||||||||||    
T  50412448 tcaaatatattgggtgtaccatagaatttgccaa 50412481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Complemental strand, 38293654 - 38293623
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  38293654 tcaaatatattggatgtaccatagaatttgcc 38293623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Complemental strand, 25929591 - 25929558
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgccaa 569  Q
    ||||||||||||| ||||||||||||||||||||    
T  25929591 tcaaatatattgggtgtaccatagaatttgccaa 25929558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 36339222 - 36339254
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  36339222 tcaaatatattgggtgtaccatagaatttgcca 36339254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 564
Target Start/End: Original strand, 36428283 - 36428311
Alignment:
Q  536 tcaaatatattggatgtaccatagaattt 564  Q
    |||||||||||||||||||||||||||||    
T  36428283 tcaaatatattggatgtaccatagaattt 36428311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Complemental strand, 29581998 - 29581967
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  29581998 tcaaatatattggatgtaccatagaatttgcc 29581967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 32846029 - 32846060
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  32846029 tcaaatatattggatgtaccatagaatttgcc 32846060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 33491537 - 33491568
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  33491537 tcaaatatattggatgtaccatagaatttgcc 33491568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 567
Target Start/End: Original strand, 352850 - 352879
Alignment:
Q  538 aaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||    
T  352850 aaatatattggatgtaccatagaatttgcc 352879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 567
Target Start/End: Original strand, 56104779 - 56104808
Alignment:
Q  538 aaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||    
T  56104779 aaatatattggatgtaccatagaatttgcc 56104808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 42177716 - 42177748
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  42177716 tcaaatatattgggtgtaccatagaatttgcca 42177748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 50383705 - 50383737
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||||||||||||| |||||||||    
T  50383705 tcaaatatattggatgtaccatataatttgcca 50383737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 53936888 - 53936920
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  53936888 tcaaatatattgggtgtaccatagaatttgcca 53936920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Complemental strand, 6945371 - 6945340
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  6945371 tcaaatatattggatgtaccatagaatttgcc 6945340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 42849703 - 42849734
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcc 567  Q
    ||||||||||||||||||||||||||||||||    
T  42849703 tcaaatatattggatgtaccatagaatttgcc 42849734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Complemental strand, 38064689 - 38064660
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttg 565  Q
    ||||||||||||||||||||||||||||||    
T  38064689 tcaaatatattggatgtaccatagaatttg 38064660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 564
Target Start/End: Complemental strand, 3260993 - 3260965
Alignment:
Q  536 tcaaatatattggatgtaccatagaattt 564  Q
    |||||||||||||||||||||||||||||    
T  3260993 tcaaatatattggatgtaccatagaattt 3260965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 4049336 - 4049368
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||| |||||||||||||||||||||||    
T  4049336 tcaaatatagtggatgtaccatagaatttgcca 4049368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 570
Target Start/End: Complemental strand, 43359129 - 43359101
Alignment:
Q  542 atattggatgtaccatagaatttgccaat 570  Q
    |||||||||||||||||||||||||||||    
T  43359129 atattggatgtaccatagaatttgccaat 43359101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 45157561 - 45157529
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  45157561 tcaaatatattgggtgtaccatagaatttgcca 45157529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 16958 - 16990
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  16958 tcaaatatattgggtgtaccatagaatttgcca 16990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 55886 - 55854
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    ||||||||||||| |||||||||||||||||||    
T  55886 tcaaatatattgggtgtaccatagaatttgcca 55854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 9497569 - 9497537
Alignment:
Q  536 tcaaatatattggatgtaccatagaatttgcca 568  Q
    |||||||||||| ||||||||||||||||||||    
T  9497569 tcaaatatattgaatgtaccatagaatttgcca 9497537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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