View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_low_21 (Length: 252)
Name: NF6124_low_21
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 45389972 - 45389730
Alignment:
| Q |
1 |
tcactacttcaattgaggtagaacctctttaattnnnnnnnnt--ctgatcattaatgacaatgttaatgttcagttgcatcagaatagaacacttaaat |
98 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45389972 |
tcactacttcaattgaggtagaacctctttaattaaaaaaaaaacctgatcattaatgacaatgttaatgttcagttgcatcagaatagaagacttaaat |
45389873 |
T |
|
| Q |
99 |
gcaagtgtggtatcgagggaatgaggtatctcaaaattttggttacacctgcaaaaccgactaataaggtgagggaagcctctcacttaaacacattttc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389872 |
gcaagtgtggtatcgagggaatgaggtatctcaaaattttggttacacctgcaaaaccgactaataaggtgagggaagcctctcacttaaacacattttc |
45389773 |
T |
|
| Q |
199 |
acgtcatttatcattcaatgagggacccaatacattcattcat |
241 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
45389772 |
acgccatttatcattcaatgagggactcaatacattcattcat |
45389730 |
T |
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