View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6124_low_23 (Length: 250)

Name: NF6124_low_23
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6124_low_23
NF6124_low_23
[»] chr6 (13 HSPs)
chr6 (25-236)||(16987825-16988036)
chr6 (22-240)||(16658377-16658592)
chr6 (22-240)||(16867583-16867798)
chr6 (22-236)||(16838046-16838260)
chr6 (22-236)||(17069874-17070085)
chr6 (22-236)||(16797534-16797748)
chr6 (45-234)||(16781496-16781685)
chr6 (45-227)||(16788356-16788538)
chr6 (22-228)||(18872771-18872977)
chr6 (22-219)||(16844201-16844398)
chr6 (22-228)||(18805777-18805983)
chr6 (163-228)||(18794208-18794273)
chr6 (79-228)||(18870294-18870443)
[»] scaffold0133 (2 HSPs)
scaffold0133 (25-236)||(13220-13431)
scaffold0133 (22-172)||(8875-9025)
[»] chr3 (2 HSPs)
chr3 (45-237)||(7052838-7053030)
chr3 (45-172)||(38938996-38939123)
[»] scaffold0144 (1 HSPs)
scaffold0144 (22-236)||(37855-38066)
[»] scaffold0256 (1 HSPs)
scaffold0256 (45-234)||(9541-9730)
[»] scaffold0511 (1 HSPs)
scaffold0511 (22-228)||(9727-9933)
[»] chr8 (1 HSPs)
chr8 (45-209)||(13378488-13378652)
[»] scaffold0230 (1 HSPs)
scaffold0230 (22-228)||(5047-5253)
[»] chr5 (1 HSPs)
chr5 (127-167)||(30712388-30712428)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 16987825 - 16988036
Alignment:
Q  25 ctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 124  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  16987825 ctttcatcattgaagaccatttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagagagtttttcactgtcactagcatgtc 16987924  T
Q  125 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcg 224  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| | ||||||| |||| || |||| ||||||||||||||||||||||||||||    
T  16987925 ttagaagaaactctacaatctgttctttatctttgtctcttccatatactttcggttctgtgatagtagaaatagtttggcgccattcatcatctcctcg 16988024  T
Q  225 ttggtgctcctc 236  Q
    ||| ||||||||    
T  16988025 ttgatgctcctc 16988036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 16658377 - 16658592
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||||||||  ||||||| |||| ||||||||| | ||| ||    |||||||||||| |||||| |||||||||||| || |||||||    
T  16658377 accctttcatcattgaagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat 16658476  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||| |||| |||||||||||||||||||||||||    
T  16658477 ---ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcc 16658573  T
Q  222 tcgttggtgctcctctgtg 240  Q
    |||||| ||||||||||||    
T  16658574 tcgttgctgctcctctgtg 16658592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 16867798 - 16867583
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||||||||   |||||| |||| ||||||||| | ||| ||    |||||||||||| |||||| |||||||||||| || |||||||    
T  16867798 accctttcatcattgaagaccacttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat 16867699  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| || |||  |||| |||||||||||||||||||||||||    
T  16867698 ---ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtaacaatagaaatagtttggcgccattcatcatctcc 16867602  T
Q  222 tcgttggtgctcctctgtg 240  Q
    |||||||||||||||||||    
T  16867601 tcgttggtgctcctctgtg 16867583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 16838046 - 16838260
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||| ||||   |||||| |||| ||||||||| | ||| ||    ||||||||||||||||||| |||||||||||| | ||||||||    
T  16838046 accctttcatcattgtagaccacttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactgttactagcat 16838145  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
    | | || ||||||||||||||||| |||||||||||||||||||||||||| | | ||||| ||||||| |||||||||| ||  |||||||||||||||    
T  16838146 gccctataagaaactctacaatctgctctttatctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatctcc 16838245  T
Q  222 tcgttggtgctcctc 236  Q
    |||||||||||||||    
T  16838246 tcgttggtgctcctc 16838260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 17069874 - 17070085
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||| ||||  ||||||| |||| ||||||||| | ||| ||    ||||||||||||||||||| |||||||||||| ||||||||||    
T  17069874 accctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactgtcactagcat 17069973  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||| || |||| ||||||||  |  ||||||||||||    
T  17069974 ---ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtgatagcagaaatagtttggatctgttcatcatctcc 17070070  T
Q  222 tcgttggtgctcctc 236  Q
    |||||||||||||||    
T  17070071 tcgttggtgctcctc 17070085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 16797534 - 16797748
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||| ||||   |||||| |||| ||||||||| | ||| ||    ||||||||||||||||||| ||||||||||||   ||||||||    
T  16797534 accctttcatcattgtagaccacttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactggtactagcat 16797633  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
    | | ||||||||||||||||||||  ||||||||||||||||||||||||| | | ||||| ||||||| |||||||||| ||  |||||||||||||||    
T  16797634 gccctagaagaaactctacaatctgttctttatctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatctcc 16797733  T
Q  222 tcgttggtgctcctc 236  Q
    |||||||||||||||    
T  16797734 tcgttggtgctcctc 16797748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 16781496 - 16781685
Alignment:
Q  45 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 144  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||| |||||||| |  |||||||| || |||||| |||| |||||     
T  16781496 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagagatcttcactattgctagcatgcctcagaagatactcaacaatt 16781595  T
Q  145 ttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcc 234  Q
    |  ||||||||| ||||||||||||||| | | | ||||||||    ||| |||||||| ||||| || |||||| || |||||||||||    
T  16781596 tgttctttatctctgtctcttccatatactttggattcagtgatgacagaggtagtttgccgccactcttcatcttctggttggtgctcc 16781685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 16788356 - 16788538
Alignment:
Q  45 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 144  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||||||||| |||||||||  | ||| ||| |||  ||||| |||||| |||||||    
T  16788356 ttgagcaagtgttgtttttccatattcacctaggccaacaatggaatagacagagagttcttctttgtcagtagtatgctttagaggaaactttacaatc 16788455  T
Q  145 ttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttg 227  Q
    | |||||||| | |||  |||||||||| ||  ||||| |||||   |||||||||||||||||| |||||| | ||||||||    
T  16788456 tgctctttatatatgtaccttccatatactacaggttcggtgacgacagaagtagtttggcgccactcatcagcacctcgttg 16788538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 18872977 - 18872771
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||||||||   ||||||||||| ||||||||| |  |||||    ||||||||||||||||||| |||||||||||| ||   |||||    
T  18872977 accctttcatcattgaagaccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcat 18872878  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
    | |||||||||||||| ||||  | |||| | ||    ||||||||||||| | ||||||||||||    ||||  |||||||||||||| |||||||||    
T  18872877 gacttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgatgacagaaaaagtttggcgccatttatcatctcc 18872778  T
Q  222 tcgttgg 228  Q
    |||||||    
T  18872777 tcgttgg 18872771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 16844201 - 16844398
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||| ||||||||||||||   ||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||| ||||  | ||| ||||||    
T  16844201 accctctcatcattgaagaccagttgagcaagtgctgtctttccatatccaccatgaccaacaatggaatagacagagagtccttccttgtcaatagcat 16844300  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatct 219  Q
    | |||||||||||||| |||| ||| || ||||| |  | |||||||   | |   ||||| || |   |||||||||||||||||||||||||||||    
T  16844301 gccttagaagaaactcaacaaccttttccttatcctcatttcttccaagaatttggggttcggtaatgaaagaagtagtttggcgccattcatcatct 16844398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 18805983 - 18805777
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||||||||||||||| |||||||||||| ||   |||||    
T  18805983 accctttcatcattgaataccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcat 18805884  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
    | |||||||||||||| ||||  | |||| | ||    ||||||||||||| | ||||||||||||     ||| ||||||||||||||| |||||||||    
T  18805883 gacttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgatgactgaattagtttggcgccatttatcatctcc 18805784  T
Q  222 tcgttgg 228  Q
    |||||||    
T  18805783 tcgttgg 18805777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 18794273 - 18794208
Alignment:
Q  163 cttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg 228  Q
    |||||||||| | |||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  18794273 cttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttgg 18794208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 18870443 - 18870294
Alignment:
Q  79 ccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcg 178  Q
    |||||||||||||||| || |||||||||||| |||  |||||| ||||| |||||||| | ||  |||||| ||||    ||||||||||| | | | |    
T  18870443 ccaacaatggaatagaaagagagttcttcactgtcaagagcatgacttagcagaaactcaaaaactttctctctatcacgatctcttccataaacttttg 18870344  T
Q  179 gttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg 228  Q
    ||||||||||   |||||||||||||||   ||||||| |||||||||||    
T  18870343 gttcagtgacgacagaagtagtttggcgattttcatcaactcctcgttgg 18870294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 13220 - 13431
Alignment:
Q  25 ctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 124  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || |    
T  13220 ctttcatcattgaagaccatttgagcaagtgttgtttttccatatccaccgtggccaacaatggaatagacagagagttcttcactctcactggcgtgcc 13319  T
Q  125 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcg 224  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||| |||    
T  13320 ttagcagaaactctacaatctgttctttatctttgtctcttccatatactttcggttcggtgacagcagaagtagtttggcgccattcatcatctcgtcg 13419  T
Q  225 ttggtgctcctc 236  Q
    |||| |||||||    
T  13420 ttggcgctcctc 13431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 8875 - 9025
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| |    
T  8875 accctttcatcattgaagactgtttgagcaagtgttgtttttccatatccaccgtggccaacaatagaatagacagagagttcttcactgtcaccagcgt 8974  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 172  Q
    | | |||||||||||||||||| | ||||||||||||||||||||||||||    
T  8975 gccgtagaagaaactctacaatatgctctttatctttgtctcttccatata 9025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 7053030 - 7052838
Alignment:
Q  45 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 144  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||| ||||||||||| || ||||||||||| ||||||    
T  7053030 ttgagcaagtgttgtttttccatatccactgtggccaacaatgggatagatagagagttcttcactgtcactagcatgcctcagaagaaactcgacaatc 7052931  T
Q  145 ttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctct 237  Q
    ||||||||||||||||||||||||||||  |    ||||||||    ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  7052930 ttctctttatctttgtctcttccatataccacaacttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctct 7052838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 38939123 - 38938996
Alignment:
Q  45 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 144  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||||||||| ||| |||||||| |   ||||||| || |||||| |||| |||||     
T  38939123 ttgagcaagtgttgtttttccatatccacctagaccaacaatggaatagacagagagatcttcactgttgttagcatgcctcagaagatactcaacaatt 38939024  T
Q  145 ttctctttatctttgtctcttccatata 172  Q
    |  |||||||||||||||||||||||||    
T  38939023 tgttctttatctttgtctcttccatata 38938996  T

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Target: scaffold0144 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 37855 - 38066
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||| ||||  ||||||| |||| ||||||||| | ||| ||    |||||||||||| |||||  |||||||||||| || || ||||    
T  37855 accctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacaaagagttcttcactttcgctggcat 37954  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
       |||||||||||||||||||||  ||||||||||||||||||||||||| | ||||||| ||||||| |||| |||||||||||||||||||||||||    
T  37955 ---ttagaagaaactctacaatctgttctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcc 38051  T
Q  222 tcgttggtgctcctc 236  Q
    |||||| ||||||||    
T  38052 tcgttgatgctcctc 38066  T

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Target: scaffold0256 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 9541 - 9730
Alignment:
Q  45 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 144  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||| |||||||| |  |||||||| || |||||| |||| |||||     
T  9541 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagagatcttcactgttgctagcatgcctcagaagatactcaacaatt 9640  T
Q  145 ttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcc 234  Q
    || ||||||||||||||||||||| ||| ||| | ||||||||   | || |||||||| ||||| || |||||| || |||||||||||    
T  9641 ttttctttatctttgtctcttccaaatactatggattcagtgatgaaggaggtagtttgccgccactcttcatcttctggttggtgctcc 9730  T

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Target: scaffold0511 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 9727 - 9933
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    ||||||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||||||||||||| | |||||||||||| ||   | |||    
T  9727 accctttcatcattgaacaccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacngagagttcttcactatccacaacat 9826  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
    | |||||||||||||| ||||  | |||| | ||   |||||||||||||| | |||||||||||||    |||||||||||||||||||||||||||||    
T  9827 gacttagaagaaactcaacaacttgctctctgtcacggtctcttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcc 9926  T
Q  222 tcgttgg 228  Q
    |||||||    
T  9927 tcgttgg 9933  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 13378488 - 13378652
Alignment:
Q  45 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 144  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||  ||||| || | ||| ||||  ||||||||| |||| |||||     
T  13378488 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagatatcttctctgttacttgcatcccttagaagatactcaacaatt 13378587  T
Q  145 ttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgcca 209  Q
    |  ||||||||||||||||||||||||| | | | || |||||    ||||||||||||||||||    
T  13378588 tgttctttatctttgtctcttccatatactttggatttagtgatgatagaagtagtttggcgcca 13378652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 5047 - 5253
Alignment:
Q  22 accctttcatcattgaagactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 121  Q
    |||||||| |||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||||||||||||||| |||||||||||| ||   |||||    
T  5047 accctttcctcattgaacaccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcat 5146  T
Q  122 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcc 221  Q
    | |||||||||||||| ||||  | |||| | ||    ||||||||||||| | |||||||||||||   ||||  |||||||||||||| |||||||||    
T  5147 gacttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgacgacagaaaaagtttggcgccatttatcatctcc 5246  T
Q  222 tcgttgg 228  Q
    |||||||    
T  5247 tcgttgg 5253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 30712428 - 30712388
Alignment:
Q  127 agaagaaactctacaatcttctctttatctttgtctcttcc 167  Q
    ||||||||||| |||||||| |||||||| |||||||||||    
T  30712428 agaagaaactcgacaatcttttctttatcattgtctcttcc 30712388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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