View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_low_24 (Length: 246)
Name: NF6124_low_24
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 30420204 - 30419991
Alignment:
| Q |
14 |
aatatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30420204 |
aatatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgatttt |
30420105 |
T |
|
| Q |
114 |
gataattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgcctt |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30420104 |
gataattttacgtcaagacaaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgcctt |
30420005 |
T |
|
| Q |
214 |
gttaaattcctaca |
227 |
Q |
| |
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|||||||||||||| |
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| T |
30420004 |
gttaaattcctaca |
30419991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 30437708 - 30437497
Alignment:
| Q |
16 |
tatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttga |
115 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |
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| T |
30437708 |
tatcatatggttggaatatatacacaaagggcaatgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttga |
30437609 |
T |
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| Q |
116 |
taattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgt |
215 |
Q |
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||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| | ||| || | |
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| T |
30437608 |
taattttacatcaagacaaaactattgcaacacaagctcaactatttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattat |
30437509 |
T |
|
| Q |
216 |
taaattcctaca |
227 |
Q |
| |
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|||||||||||| |
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| T |
30437508 |
taaattcctaca |
30437497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 30381410 - 30381202
Alignment:
| Q |
14 |
aatatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgatttt |
113 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||| || ||| |||| | |||||||||| |||| ||||| |
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| T |
30381410 |
aatatcatatggttggcatatacacacaaagagccatgttggttaccacccttgttagtatacccttgtcaattatatgggcatacttagaacctatttt |
30381311 |
T |
|
| Q |
114 |
gataattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgcctt |
213 |
Q |
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| | ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||| ||||||||||||| || |
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| T |
30381310 |
ggtgattttacatcaagaccaaactattgcagcacaagctcaattatttgctcgttactcaattcctagccttgctgccaatggccttcttaggtgcatt |
30381211 |
T |
|
| Q |
214 |
gttaaattc |
222 |
Q |
| |
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||||||||| |
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|
| T |
30381210 |
gttaaattc |
30381202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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