View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_low_25 (Length: 242)
Name: NF6124_low_25
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7978128 - 7978348
Alignment:
| Q |
1 |
cattctcaaaaacggagagaataacaataagtaaaatgatgttttattatccttaaactcgagcctcgttagcttttccaaaccatatcaacatcatatc |
100 |
Q |
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| T |
7978128 |
cattctcaaaaacggagagaataacaataagtaaaatgatgttttattatccttaacctcgagcctcgttagcatttccaaaccatatcaacatcatatc |
7978227 |
T |
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| Q |
101 |
cttccaatttcaaataagcaacaaagacaaccttgtatgcagtgttatgtttcatgcagagccatnnnnnnntgttccaaaaagtgcaacaatggacaat |
200 |
Q |
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| T |
7978228 |
cttccaatttcaaataagcaacaaagacaaccttgtatgcagtgttatgtttcatgcagagccataaaaaaatgttccaaaaagtgcaacaatggacaat |
7978327 |
T |
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| Q |
201 |
gatgacaatggacgatggtga |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7978328 |
gatgacaatggacgatggtga |
7978348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 16553194 - 16553308
Alignment:
| Q |
39 |
atgttttattatccttaaactcgagcctcgttagcttttccaaaccatatcaacatcatatccttccaatttcaaataagcaacaaagacaaccttgtat |
138 |
Q |
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| T |
16553194 |
atgttttatcatccttaaactcaggcataattagcatttccaaaccatatccacgtcatatcattccactctcaaataagctacaaagacaaccttgtat |
16553293 |
T |
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| Q |
139 |
gcagtgttatgtttc |
153 |
Q |
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| T |
16553294 |
gcagttttttgtttc |
16553308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 1498775 - 1498683
Alignment:
| Q |
38 |
gatgttttattatccttaaactcgagcctcgttagct-tttccaaaccatatcaacatcatatccttccaatttcaaataagcaacaaagaca |
129 |
Q |
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| T |
1498775 |
gatgttttattatccttaaattcaagcttcattaccaatttccaaaccatatccacatcatatcctttcactttcaaataagcaacaaagaca |
1498683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 1516508 - 1516440
Alignment:
| Q |
38 |
gatgttttattatccttaaactcgagcctcgttagcttttccaaaccatatcaacatcatatccttcca |
106 |
Q |
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| T |
1516508 |
gatgttttattatccttaaactcaggcctaattagcatttccaaaccatatcaacatcatatccttcca |
1516440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 1530738 - 1530670
Alignment:
| Q |
38 |
gatgttttattatccttaaactcgagcctcgttagcttttccaaaccatatcaacatcatatccttcca |
106 |
Q |
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||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
1530738 |
gatgttttattatccttaaactcaggcctaattagcatttccaaaccatatcaacatcatatccttcca |
1530670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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