View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_low_3 (Length: 583)
Name: NF6124_low_3
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 76 - 567
Target Start/End: Complemental strand, 9575077 - 9574578
Alignment:
| Q |
76 |
ccacaatgggattctctcaaattattttgaccactctttatttatttatcaacatggcaatgacatcgtctatattcttttgtatgtggatgccattatt |
175 |
Q |
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| T |
9575077 |
ccacaatgggattctcttaaattattttgaccactctttatttatttatcaacatggcaatgacaccgtctatattcttttgtatgtggatgacatcatt |
9574978 |
T |
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| Q |
176 |
cttgccgcttcttctgactctctttatgaattgattatgtctaagcttaactttgaatttttcgtgaagtcatca--cccgtccagttatttttctttct |
273 |
Q |
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| T |
9574977 |
cttgccgcttcttctgactatctttatgaattgattatgtctaagcttaactttgaattttccatgaaggattgaggcccgtccagttatttttctttct |
9574878 |
T |
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| Q |
274 |
caaaataaatatgcagaggaagttattgagcacacatgtatgtctgctggcaagtcatcacccacacatgtgaatacaaaggcaaaactcagtggttctt |
373 |
Q |
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| T |
9574877 |
caaaataaatatgcagaggaagttattgagcacacatgtatgtctactggcaagtcatcacccatacatgtgaatacaaaggcaaaactcagtggttctt |
9574778 |
T |
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| Q |
374 |
caagaaactcctatgaagatccaacataatatcataacctcgcttgatctttgcaatacctgacatttacaagatcaaatatctcttctgaagttcaaga |
473 |
Q |
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| T |
9574777 |
catgaaacccctatgaagatccaacataatatcatagcctcgcttgagcattgtagtacctgacatttacaagatcaaatatctcttatgaagttcaaga |
9574678 |
T |
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| Q |
474 |
agtgtgcttgtttatacataacccaaaaacacaacacatgtctttttgaaaagtattatt------attcatggcactattgagtttagcctcaacctat |
567 |
Q |
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| T |
9574677 |
agtgtgcttgtttatacataccccaaaaacacaacacatgtctttatgaaaagtattattcattacattcatggcactattgagtttagcctcaacctat |
9574578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 9575176 - 9575109
Alignment:
| Q |
12 |
atactcaactccctggccatgtctgtcttctaaaaaattctctccatggacttatacaagcaccccac |
79 |
Q |
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| T |
9575176 |
atactcaactccctggccatgtatgtcttctaaaaaattctctccatggacttatacaagcaccccac |
9575109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 516
Target Start/End: Original strand, 25745339 - 25745419
Alignment:
| Q |
436 |
acatttacaagatcaaatatctcttctgaagttcaagaagtgtgcttgtttatacataacccaaaaacacaacacatgtct |
516 |
Q |
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| T |
25745339 |
acatttacaagaccagatatctcttatgtagttcaacatgtatgcttgtttatgcatgatccaaaaacataacatatgtct |
25745419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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