View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6124_low_31 (Length: 204)
Name: NF6124_low_31
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 5466983 - 5466810
Alignment:
| Q |
13 |
ttatacttgggccagagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggta |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5466983 |
ttatacttgggccagagacatcaagatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggta |
5466884 |
T |
|
| Q |
113 |
attgagcgtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5466883 |
attgagcgtattgagagaaccaataaattcaggaatgggaactcctttgaaatcattatagctcaagtccaagt |
5466810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 5481714 - 5481554
Alignment:
| Q |
26 |
agagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
125 |
Q |
| |
|
||||| |||| ||| |||||||||||||| ||| || ||||||||| |||||||||| | ||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
5481714 |
agagatatcaagataatgcaaatttgacagattgccaagatgaggaaggaccattcctgtaaaatttgcattagataagtcaaggtaattgagcatattg |
5481615 |
T |
|
| Q |
126 |
agagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
5481614 |
agagaaccaataaattctggaatgggaactcctttgaaatcattaaagcttaggtccaagt |
5481554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 5495545 - 5495385
Alignment:
| Q |
26 |
agagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
125 |
Q |
| |
|
||||| |||| ||| |||||| ||||||||||| || |||||||| ||||||||||||||||||| || || ||||| ||||||||||||||| ||||| |
|
|
| T |
5495545 |
agagatatcaagataatgcaagtttgacaaattgccaagatgaggggggaccattccagaaaaatatgaatctgataagtcaaggtaattgagcatattg |
5495446 |
T |
|
| Q |
126 |
agagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagt |
186 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
5495445 |
agggaaccaataaattctggaatgggaactccttcgaaatcattatatcttaggtccaagt |
5495385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 5489769 - 5489603
Alignment:
| Q |
20 |
tgggccagagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagc |
119 |
Q |
| |
|
||||| ||||| |||| ||| || |||||||| ||||| || |||| || ||||||||||||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
5489769 |
tgggctagagatatcaagatagtgtaaatttgataaattgccaagattagtcgggaccattccagtgaaatttgcattggacaagtcaaggtaattgagc |
5489670 |
T |
|
| Q |
120 |
gtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagt |
186 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| || ||| ||||||||| |||||||| |
|
|
| T |
5489669 |
atattgagataaccaataaattctggaatgggagctccttcaaagtcactatagcttaggtccaagt |
5489603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 5484561 - 5484418
Alignment:
| Q |
43 |
gcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattc |
142 |
Q |
| |
|
|||||||||||||||| || |||||| |||||| ||||||| ||||||||||| |||| ||||||||||| | | | ||||||||||||||| ||| |
|
|
| T |
5484561 |
gcaaatttgacaaattgccaagatgattagggacaattccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttc |
5484462 |
T |
|
| Q |
143 |
tggaatgggaactcctttgaaatcattatagcttaagtccaagt |
186 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
5484461 |
tggaatgggaattccttcgaaatcattgaagcttaagtccaagt |
5484418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 5476638 - 5476501
Alignment:
| Q |
26 |
agagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
125 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||| || |||| || |||||||||||| | ||| |||| || ||||| ||||| ||||| ||| ||||| |
|
|
| T |
5476638 |
agagatatcaagatggtgcaaatttgacaaattaccaagatcagtagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattg |
5476539 |
T |
|
| Q |
126 |
agagaaccaataaattctggaatgggaactcctttgaa |
163 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
5476538 |
agagaaccaataaattctggaatggaaattcctttgaa |
5476501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University