View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_low_8 (Length: 380)
Name: NF6124_low_8
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 36984877 - 36985229
Alignment:
| Q |
18 |
tctttgtgttctgtttggagtctatctccatttgtccccttgagattgggagatgtaaaatttactcaaacaagaacttgtaataagaactatattaatt |
117 |
Q |
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| T |
36984877 |
tctttgtgttctgtttggagtctatctccatttgtccccttgagattgggagatgtaaaatttactcaaacaagaacttgtaataagaactatattaatt |
36984976 |
T |
|
| Q |
118 |
tcacaacacttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatccttttgcttctgcagagca |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36984977 |
tcacaacacttaacatcgaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatccttttgcttctgcagagca |
36985076 |
T |
|
| Q |
218 |
gcactgtgtttccttccactgaagtgggcattcaagatttcctctgctgttatcaaacataaatcacaagtccggtctttctgcaaatccatctgcgtag |
317 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36985077 |
gcactgtgtttccttccactgaagcgggcattcaagatttcctctgctgttgtcaaacataaatcacaagtccggtctttctgcaaatccatctgcatag |
36985176 |
T |
|
| Q |
318 |
aagaactccgaggaacctctccaccagccctgtccccctctactgttcctttg |
370 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36985177 |
aagaactctgaggaacctctccaccagccctgtccccctctactgttcctttg |
36985229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 58 - 350
Target Start/End: Original strand, 36986063 - 36986363
Alignment:
| Q |
58 |
tgagattgggagatgtaaaatttactcaaacaagaacttgtaataagaactatattaatttcacaacacttaacatcaaaactttacctttagtatttct |
157 |
Q |
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| T |
36986063 |
tgagattgggacatgtaaaattgactcatacaagaacttgtaacaaaaacta-attgatttcacaacacttaacatcaaaactttatctttagtatttct |
36986161 |
T |
|
| Q |
158 |
ttattatcagtagttgtgatttcatttatcgcttctgcatccttttgcttctgcagagcagcactgtgtttccttccactgaagtgggcattcaagattt |
257 |
Q |
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||||| ||||||| | ||||||||||| || | ||||||||||||||| |||| |||||||| ||||||||| ||||||| | ||||| ||||||||||| |
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| T |
36986162 |
ttattttcagtagctatgatttcatttttcacctctgcatccttttgcctctgaagagcagctctgtgtttctttccactcaggtgggaattcaagattt |
36986261 |
T |
|
| Q |
258 |
cctc------tgctgttatcaaacataaatcacaagtccggtctttctgcaaatccatctgcgtaga---agaactccgaggaacctctccaccagccct |
348 |
Q |
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| T |
36986262 |
tctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtgtagaagtagaactctgaggaacctctccaccagcgct |
36986361 |
T |
|
| Q |
349 |
gt |
350 |
Q |
| |
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|| |
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| T |
36986362 |
gt |
36986363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 36996255 - 36996369
Alignment:
| Q |
102 |
aagaactatatt-aatttcacaac--acttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatc |
198 |
Q |
| |
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|||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
36996255 |
aagaactatatttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtagccatgatttcatttgtcccttctgcatc |
36996354 |
T |
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| Q |
199 |
cttttgcttctgcag |
213 |
Q |
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||||||||||||||| |
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| T |
36996355 |
cttttgcttctgcag |
36996369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 36980360 - 36980495
Alignment:
| Q |
81 |
actcaaacaagaacttgtaataagaactata--ttaatttcacaacacttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatt |
178 |
Q |
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||||| ||||||||||||| ||||| |||| ||||||||| ||||||| |||||||||||||||||| |||||| |||||||||||||| | || || |
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| T |
36980360 |
actcatacaagaacttgtagcaagaaatatatattaatttcagaacacttcacatcaaaactttaccttgggtatttttttattatcagtagctatggtt |
36980459 |
T |
|
| Q |
179 |
tcat---ttatcgcttctgcatccttttgcttctgc |
211 |
Q |
| |
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| || || ||||||||||| |||||||||||||| |
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| T |
36980460 |
ttatttgttgtcgcttctgcacccttttgcttctgc |
36980495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 36981229 - 36981327
Alignment:
| Q |
102 |
aagaactatattaatttcacaac--acttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatc |
198 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||| |||| || ||||||||| ||||||||||||| |
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| T |
36981229 |
aagaactatattaatttcacaaatgacttagcatcaaaactttacctttaacatttctttatcatcggtagctgaaatttcatttgtcgcttctgcatc |
36981327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 36987321 - 36987405
Alignment:
| Q |
102 |
aagaactatattaatttcacaac--acttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcattt |
184 |
Q |
| |
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||||||||||||||| ||||||| |||||| || ||||||| |||||||| ||||||||||||||||||| | ||||||||||| |
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| T |
36987321 |
aagaactatattaatgtcacaactgacttaatattaaaacttcacctttagcatttctttattatcagtagctatgatttcattt |
36987405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 36997115 - 36997185
Alignment:
| Q |
128 |
taacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatc |
198 |
Q |
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| T |
36997115 |
taacatcaaaactttaccattagcatatctttatcatcagtagctatgatttcatttctcacttctgcatc |
36997185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 37000889 - 37001009
Alignment:
| Q |
81 |
actcaaacaagaacttgtaataagaactatattaatttcacaac--acttaacatc-aaaactttacctttagtatttctttattatcagtagttgtgat |
177 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||| ||||||| |||| ||| | ||||||||||||||| |||||||| | ||| |||| | || | |
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| T |
37000889 |
actcatacaagaacttgtaacaaaaactatattaatgtcacaactgactttacaccaaaaactttacctttaatatttcttcactattagtatctatggt |
37000988 |
T |
|
| Q |
178 |
ttcatttatcgcttctgcatc |
198 |
Q |
| |
|
||||||| || |||||||||| |
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| T |
37000989 |
ttcatttgtcacttctgcatc |
37001009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 36980639 - 36980690
Alignment:
| Q |
319 |
agaactccgaggaacctctccaccagccctgtccccctctactgttcctttg |
370 |
Q |
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||||||||||||||| |||||||||||||| || | |||| ||||||||||| |
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| T |
36980639 |
agaactccgaggaacttctccaccagccctttcactctctgctgttcctttg |
36980690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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