View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6125_high_1 (Length: 712)
Name: NF6125_high_1
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 248 - 692
Target Start/End: Original strand, 11375942 - 11376386
Alignment:
| Q |
248 |
acaccagaataatggtcgaatgacgaatacagaaacctggacaaagagagagaaatgtattcaatatgtatattcaactacaccttcttttgtgtataag |
347 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11375942 |
acaccagaaaaatggtcgaatgacgaatacagaaacctggacaaagagagaaaaatgtattcaatatgtatattcaactacaccttcttttgtgtataag |
11376041 |
T |
|
| Q |
348 |
atgttgagattctaaaacagcaagtaaatacattgctggttcaaagttcaaactatatcaaacaccattgttaaactaataaatcaatacaatcttcacg |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11376042 |
atgttgagattctaaaacagcaagtaaatacattgctggttcaaagttcaaactatatcaaacaccattgttaaactaataaatcaatacaatcttcacg |
11376141 |
T |
|
| Q |
448 |
caaagtctagttcaacttcatttggttctgtcaattaaacaaacacaacaaaggcatcacacattaactaattaaaacaacaaaaccatagattactctg |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11376142 |
caaagtctagttcaacttcatttggttctgtcaattaaacaaacacaacaaaggcatcacacattaactaattaaaacaacaaaaccatagattactctg |
11376241 |
T |
|
| Q |
548 |
tcaaaaaattaataactggtttgatttttcacaatcaatgtaacaaacgcattcaaaatataaaatagcatagaaaataaagattgcacagaaagctata |
647 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11376242 |
tcaaaaaattaataactggtttgaattttcacaatcaatgtaacaaacgcattcaaaatataaaatagcatagaaaataaagattgcacaaaaagctata |
11376341 |
T |
|
| Q |
648 |
tcataagaaaagcgggtaagaagtagaaagatcacaaagacaagt |
692 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
11376342 |
tcataagaaaagcgagtaagaagtagaaagatcacaaaaacaagt |
11376386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 11375731 - 11375944
Alignment:
| Q |
9 |
gagtgagatgaatgaatcaaataatcgatagagagaaataagaccgagacttacaaggaaccattgagaagggtgtttgcacaaaatctgtttttgttag |
108 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11375731 |
gagtgaaatgaatgaatcaaataatggatagagagaaataagaccgagacttacaaggaaccactgagaagggtgtttgcacaaaatctgtttttgttag |
11375830 |
T |
|
| Q |
109 |
gaagccagaaactgcagtgcttagtctccatattacttcccaggtagccttaaattatggttttcggtaaattttctaataactgaataaccaaaggtca |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11375831 |
gaagccagaaactgcagcgcttagtctccatattacttcccaggtagccttaaattatggttttcggtagattttctaataactgaataaccaaaggtca |
11375930 |
T |
|
| Q |
209 |
gcggagtcagcaca |
222 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
11375931 |
gcggagtcaacaca |
11375944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University