View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6125_high_11 (Length: 250)
Name: NF6125_high_11
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 422950 - 422716
Alignment:
| Q |
7 |
ctaaggtacatacaagtgtgtcttctataacttttgaagtctaaagtttgatttagaatgctctgtatctctttctctccaagtgtgtagattgttaata |
106 |
Q |
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| T |
422950 |
ctaaggtacatacaagtgtgtcttctataacttttgaagtctaaagttttatttagaatgctttgtatctctttctctccaagtgtgtagattgttaata |
422851 |
T |
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| Q |
107 |
ggatgcatatatttgcaatacatttgtctttttagacggtatatagattttgagagcatttgttggtgtcaag-nnnnnnnnnggtcgctaagaggattt |
205 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
422850 |
ggatgcatatatttgtaatacattggtctttttagacggtatatagattttgagagcatttgttggtgtcaagttttttttttggtcgctaagaggattt |
422751 |
T |
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| Q |
206 |
acttacaacctttgatggatgatactgtatctgtg |
240 |
Q |
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|| ||||||||||||||||||||||| |||||||| |
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| T |
422750 |
acatacaacctttgatggatgatactctatctgtg |
422716 |
T |
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