View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6125_high_17 (Length: 225)
Name: NF6125_high_17
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 42006001 - 42005783
Alignment:
| Q |
7 |
aatcttggagcctatggtgattctccattttccttcagaagttagccaagcagttgttgggtcgcgaaagtcctttggaagaatgcctggtggagggacg |
106 |
Q |
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| T |
42006001 |
aatcttggagcctatggtgattctccattttccttcagaagtgagccaagcagttgttgggtcgcgaaagtcctttggaagaatgcctggtggagggacg |
42005902 |
T |
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| Q |
107 |
agaaccgggttggcagggtatttgatccaatccacaaggagagggtcattgagatcagcagggtatgcaagattttggacttgcactgtttcattggttg |
206 |
Q |
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| T |
42005901 |
agaaccgggttggcagggtatttgatccaatccacaaggagagggtcattgagatcagcagggtatgcaagattttggacttgcactgtttcattggttg |
42005802 |
T |
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| Q |
207 |
aaccggtatataacatgat |
225 |
Q |
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|||| |||||||||||||| |
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| T |
42005801 |
aaccagtatataacatgat |
42005783 |
T |
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