View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6125_high_2 (Length: 508)
Name: NF6125_high_2
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Complemental strand, 14783248 - 14782768
Alignment:
| Q |
9 |
catcatcatcatcaatctctcaccatgaaccctaccaacaaagaagacacaattgacattgaagccattgatcatcaagaagaagaaacacaacaacatc |
108 |
Q |
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| T |
14783248 |
catcatcatcatcaatctctcaccacgaaccctaccaacaatgaagacacaattgacattgaagccattgatcatcaagaagaa---acacaacaacatc |
14783152 |
T |
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| Q |
109 |
aaaatcaaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaa |
208 |
Q |
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| T |
14783151 |
aaaatcaaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaa |
14783052 |
T |
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| Q |
209 |
ctttctcttactctttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaa |
308 |
Q |
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| T |
14783051 |
ctatctcttactctttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaa |
14782952 |
T |
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| Q |
309 |
tgtgctggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccaaaaatgttaa |
408 |
Q |
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| T |
14782951 |
tgtgctggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccgaaaatgttaa |
14782852 |
T |
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| Q |
409 |
ccctatcaatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaactt |
492 |
Q |
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| T |
14782851 |
ccctatcaatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaactt |
14782768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 309
Target Start/End: Complemental strand, 14775227 - 14775077
Alignment:
| Q |
159 |
gatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaat |
258 |
Q |
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|||||||| |||| || |||||||||||||| || |||||| | || |||| || || |||||||| || ||| || ||||||||||||||||| | |
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| T |
14775227 |
gatcaaaagtccaccactaacaaaaggtacataccccttttggttattaactaccttttgctctttgtagggtcactttcttcaagtttactctcaaagt |
14775128 |
T |
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| Q |
259 |
actatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaat |
309 |
Q |
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||||||| ||||| |||||||| || | |||||| |||||||||||||||| |
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| T |
14775127 |
actattttatccataaaggttctagtagatgggtttcaacttgggttcaat |
14775077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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