View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6125_high_3 (Length: 448)
Name: NF6125_high_3
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 41724981 - 41725396
Alignment:
| Q |
16 |
ataagattgaagaagaaaagcatgtttgtcgggaggacaatcccactcctgtgcagtatcaaagtccaaatcacatagaaattgatactgctgaaaagat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41724981 |
ataagattgaagaagaaaagcatgtttgtcgggaggacaatcccactcctgtgcagtatcaaagtccaaatcacatagaaattgatactgctgaaaagat |
41725080 |
T |
|
| Q |
116 |
aggttccactagcaagccctttaatgatgcaaaacaattccaatggaagatggatcttcatgctcttggagtatcttacaaaatcaagagacttaaacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41725081 |
aggttccactagcaagccctttaatgatgcaaaacaattccaatggaagatggatcttcatgctcttggagtatcttacaaaatcaagaggcttaaacaa |
41725180 |
T |
|
| Q |
216 |
caactaattcttattgaaaggttgaccggaatgcaaaacaatgatgaacatgcagaaattaatgaagatagcaaagtcggtatgaaggcttatctgtcct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41725181 |
caactaattcttattgaaaggttgaccggaatgcaaaacaatgatgaacatgcagaaattaatgaagatagcaaagtcggtatgaaggcttatctgtcct |
41725280 |
T |
|
| Q |
316 |
tgattactttgctgaataaacaaatcggaagatatcaatccctccaagaaaagaccgatgatctttgcaaacgaatggtatgcattgattcttgtatatt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41725281 |
tgattactttgctgaataaacaaatcggaagatatcaatccctccaagaaaagaccgatgatctttgcaaacgaatggtatgcattgattcttgtatatt |
41725380 |
T |
|
| Q |
416 |
tttacgtgttctgcat |
431 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41725381 |
tttacgtgttctgcat |
41725396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University