View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6125_low_16 (Length: 227)

Name: NF6125_low_16
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6125_low_16
NF6125_low_16
[»] chr5 (1 HSPs)
chr5 (1-225)||(40961354-40961578)
[»] chr2 (2 HSPs)
chr2 (95-187)||(12129168-12129258)
chr2 (95-163)||(37528913-37528980)
[»] chr6 (1 HSPs)
chr6 (95-213)||(30453614-30453730)
[»] chr1 (2 HSPs)
chr1 (143-214)||(51377599-51377673)
chr1 (95-165)||(41005179-41005248)
[»] chr7 (1 HSPs)
chr7 (95-165)||(31440124-31440193)
[»] chr4 (1 HSPs)
chr4 (95-212)||(32026118-32026233)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40961578 - 40961354
Alignment:
Q  1 ctataaacactcttaactatccaaaatacgagaaatatttgcttaaagacaaacctaaatnnnnnnnnttggacacactcacgaatgnnnnnnnaaagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||||       ||||||    
T  40961578 ctataaacactcttaactatccaaaatacgagaaatatttgcttaaagacaaacctaaataaaaaaaattggacacactcacaaatgtttttttaaagag 40961479  T
Q  101 aaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataattttaattgcaattgtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40961478 aaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataattttaattgcaattgtgt 40961379  T
Q  201 ctatgtaagactagctgccaaaata 225  Q
    ||||||||||||| |||||||||||    
T  40961378 ctatgtaagactaactgccaaaata 40961354  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 12129258 - 12129168
Alignment:
Q  95 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataatttta 187  Q
    ||||| ||| ||||||||||| |||| ||||||||||||| ||||||||    |||||||| |||||||||| ||||||||||||||||||||    
T  12129258 aaagataaattggtttaatgatgttgaatgatatgactaatttatttatta--tttaatttttttcattgttgtgtgtgtccaaataatttta 12129168  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 37528980 - 37528913
Alignment:
Q  95 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcatt 163  Q
    ||||||||||||||||||| |  |||  |||| ||||||| |||||| |||||||||||||||||||||    
T  37528980 aaagagaaaatggtttaataatattgagtgatgtgactaatttattt-tatcttttaatttctttcatt 37528913  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 30453730 - 30453614
Alignment:
Q  95 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataattttaattgcaa 194  Q
    ||||| ||||| |||||||||  ||| ||||| ||||||| ||||||||  |||||| ||| ||||||| || |||||| | ||||||||||  ||| |     
T  30453730 aaagataaaatagtttaatgatattgaatgatttgactaatttatttat--cttttagtttttttcattattgtgtgtgcctaaataattttgtttgtat 30453633  T
Q  195 ttgtgtctatgtaagacta 213  Q
    |||| ||||||||||||||    
T  30453632 ttgtatctatgtaagacta 30453614  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 51377599 - 51377673
Alignment:
Q  143 tatcttttaatttctttcattgttttgtgtgt--ccaaataattttaattgcaattgtgtc-tatgtaagactag 214  Q
    |||||||||||||||| || |||| |||||||  ||||||||||||| ||| ||||||||| |||||||||||||    
T  51377599 tatcttttaatttcttccactgttgtgtgtgtgaccaaataattttacttgtaattgtgtcttatgtaagactag 51377673  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 41005179 - 41005248
Alignment:
Q  95 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgt 165  Q
    ||||||||||| ||||||||| |||   |||| ||||||| |||||| ||||||||||||| |||||||||    
T  41005179 aaagagaaaatagtttaatgatgttaagtgatgtgactaatttattt-tatcttttaatttttttcattgt 41005248  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 31440193 - 31440124
Alignment:
Q  95 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgt 165  Q
    ||||||||||| ||||||||| ||||  |||| ||| ||| ||||||  ||||||||||||||||||||||    
T  31440193 aaagagaaaattgtttaatgatgttgagtgatgtgattaatttatttc-atcttttaatttctttcattgt 31440124  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 32026118 - 32026233
Alignment:
Q  95 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataattttaattgcaa 194  Q
    ||||| ||| ||||||||||| |||| ||||  ||||| | ||||||||  | ||||||||  ||||||||| |||||| |||||| |||||| |||       
T  32026118 aaagataaattggtttaatgatgttgaatgacgtgactgatttatttat--catttaattttcttcattgttgtgtgtgcccaaattattttatttgtgt 32026215  T
Q  195 ttgtgtctatgtaagact 212  Q
    |||| |||||||||||||    
T  32026216 ttgtatctatgtaagact 32026233  T

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