View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6125_low_4 (Length: 447)
Name: NF6125_low_4
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 40961317 - 40960900
Alignment:
| Q |
16 |
ggcagactcaacattagcaacaacctcaggttttaaagagatggaagcggtctcaatcgagctttgttagatgcaacattgacgcatcgttctctaagcc |
115 |
Q |
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| T |
40961317 |
ggcacactcaacattagcaacaacctcaggttttaaagagatggcagcggtctccatcgagctttgttagatgcaacattgatgcgtcgttctctgagcc |
40961218 |
T |
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| Q |
116 |
gcaaaacaaagtgagaataggcatatcatgtgttcatgatgagtttgggattttcatgagagcaaaaaggtggtggatcggccaataatggagattaatg |
215 |
Q |
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| T |
40961217 |
tcaaaacaaagtgagaataggcatatcatgtgttcacgatgagtttgggattttcatgagagcaaaaaggtggtggttcggccaataatggagattaatg |
40961118 |
T |
|
| Q |
216 |
tgggagacattgtgggattgttggcttctattaaatggatgaaagagtcggggtttaaacaaattatatttactctttactctaaaaatgtagtagactc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40961117 |
tgggagacattgtgggattgttggcttctattaaatggatgaaagagtcggggtttaaacaaattatatttactctttactctaaaaatgtagtagactt |
40961018 |
T |
|
| Q |
316 |
tttcaacggagcagtacatggtcaatctcgttaggttctattctatctaaatctcatagcattttatcgtcgtttttaataactcttatattaagttctt |
415 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
40961017 |
tttcaacggagcagtgcatggtcaatctctttaggttctattttatctaaatctcatagcattttattgtcgtttttaataactcttatattgagttctt |
40960918 |
T |
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| Q |
416 |
tagaagagaagttaatat |
433 |
Q |
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|||||||||||||||||| |
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| T |
40960917 |
tagaagagaagttaatat |
40960900 |
T |
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