View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6125_low_5 (Length: 402)
Name: NF6125_low_5
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 22 - 385
Target Start/End: Complemental strand, 33814427 - 33814044
Alignment:
| Q |
22 |
agaaatatgtcctagtcttgtaagatatgtggtcactggcccttgtatctataacccaaagtataggattcttacacataagagtagaagagatgatgca |
121 |
Q |
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| T |
33814427 |
agaaatatgtcctagtcttgtaagatatgtggtcactggcccttgtatctataacccaaagtatagcattcttacacataaaagtagaagagatgatgca |
33814328 |
T |
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| Q |
122 |
tattgaattttggtt--------------------ataatctgtagacaagagtagcattccaattttctcctttgtaactttctcttttaatgattcaa |
201 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814327 |
tattgaattttggttcatgttagttagttttggttataatttgtagacaagagtagcattccaattttctcctttgtaactttctcttttaatgattcaa |
33814228 |
T |
|
| Q |
202 |
taataatgatgcatatttagtattcttcggttgagcttgcgtcttcttttgaggatggtgcatcacttttttcaaacttaattttaactaaaaccaactg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814227 |
taataatgatgcatatttagtattcttcggttgagcttgcgtcttcttttgaggatggtgcatcacttttttcaaacttaattttaactaaaaccaactg |
33814128 |
T |
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| Q |
302 |
atacatatgtagtcttgttttcccttcaactatcggttgttctttctttgggtaaaatatggttttgcttgcaccactgccatg |
385 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33814127 |
atacatatgtagtcttgttttccctgcaactatcggttgttctttgtttgggtaaaatatggttttgcttgcaccactgccatg |
33814044 |
T |
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