View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6125_low_8 (Length: 314)
Name: NF6125_low_8
Description: NF6125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6125_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 7166364 - 7166648
Alignment:
| Q |
13 |
aatatatacacagtacaaagaatcatgacccttctagcgcgacatggacgtactgaattggttgatagactcatcttgaagatcagaatagagggaatga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7166364 |
aatatatacacagtacaaagaatcatgacccttctagcgcgacatggacgtactgaattggttgatagactcatcttgaagatcagaatagagggaatga |
7166463 |
T |
|
| Q |
113 |
gactaccattcagtaccataaggttaatcattgacttttacgggatttcaaaaaatgctgatgctgctctgaaggttttcaacgatgatcaaatactttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7166464 |
gactaccattcagtaccataaggttaatcattgacttttacgggatttcaaaaaatgctgatgctgctctgaaggttttcaacgatgatcaaatactttg |
7166563 |
T |
|
| Q |
213 |
tgggtctatatcgaaagttaacttgatgcttctgtattcctctcttttaagaacattaaccaagtatggaaggaattccgatacc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7166564 |
tgggtctatatcgaaagttaacttgatgcttctgtattcctctcttttaagaacattaaccaagtgtggaaggaattccaatacc |
7166648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University