View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6126_high_3 (Length: 314)

Name: NF6126_high_3
Description: NF6126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6126_high_3
NF6126_high_3
[»] chr3 (10 HSPs)
chr3 (76-299)||(48802693-48802916)
chr3 (18-64)||(6437982-6438028)
chr3 (8-66)||(11054443-11054500)
chr3 (8-66)||(23311728-23311785)
chr3 (8-66)||(36546474-36546531)
chr3 (8-66)||(36561784-36561841)
chr3 (8-61)||(48802618-48802674)
chr3 (8-66)||(23910630-23910687)
chr3 (16-64)||(14752382-14752429)
chr3 (16-64)||(28875309-28875356)
[»] chr8 (8 HSPs)
chr8 (8-66)||(41086563-41086621)
chr8 (8-66)||(7022580-7022637)
chr8 (8-66)||(7858454-7858511)
chr8 (18-64)||(13143661-13143706)
chr8 (8-65)||(26483460-26483515)
chr8 (16-64)||(8107834-8107882)
chr8 (34-62)||(28348511-28348539)
chr8 (16-64)||(34890390-34890437)
[»] chr7 (15 HSPs)
chr7 (10-66)||(35923180-35923235)
chr7 (8-66)||(18102457-18102514)
chr7 (8-66)||(25737802-25737859)
chr7 (8-66)||(47557922-47557979)
chr7 (8-63)||(39174181-39174235)
chr7 (95-157)||(5276149-5276214)
chr7 (34-64)||(6190944-6190974)
chr7 (8-66)||(14805798-14805855)
chr7 (8-66)||(15252792-15252849)
chr7 (18-63)||(44877792-44877835)
chr7 (10-63)||(46760435-46760487)
chr7 (34-66)||(4910864-4910896)
chr7 (34-66)||(16562676-16562708)
chr7 (34-66)||(16602954-16602986)
chr7 (16-64)||(25944475-25944522)
[»] scaffold0045 (1 HSPs)
scaffold0045 (8-66)||(77885-77942)
[»] chr5 (9 HSPs)
chr5 (8-66)||(842742-842799)
chr5 (8-66)||(6686311-6686368)
chr5 (112-182)||(7096182-7096255)
chr5 (8-66)||(11262060-11262117)
chr5 (8-66)||(43590138-43590195)
chr5 (33-66)||(25840760-25840793)
chr5 (16-64)||(9957631-9957678)
chr5 (14-66)||(37522772-37522823)
chr5 (14-66)||(37562944-37562995)
[»] chr4 (7 HSPs)
chr4 (8-65)||(41414778-41414834)
chr4 (8-65)||(47867806-47867862)
chr4 (8-66)||(14332685-14332742)
chr4 (8-66)||(26916251-26916308)
chr4 (14-66)||(2229173-2229224)
chr4 (8-66)||(28669169-28669226)
chr4 (34-66)||(30012131-30012163)
[»] chr1 (10 HSPs)
chr1 (8-65)||(35691320-35691376)
chr1 (8-66)||(12449143-12449200)
chr1 (8-66)||(32624182-32624239)
chr1 (8-66)||(39555762-39555819)
chr1 (8-66)||(43667476-43667533)
chr1 (101-181)||(28077103-28077186)
chr1 (8-66)||(24190399-24190455)
chr1 (13-66)||(2125965-2126017)
chr1 (18-64)||(16854034-16854082)
chr1 (19-64)||(24728845-24728889)
[»] scaffold0018 (1 HSPs)
scaffold0018 (8-63)||(154792-154846)
[»] chr6 (5 HSPs)
chr6 (8-66)||(3095897-3095954)
chr6 (14-66)||(21542346-21542397)
chr6 (8-65)||(11082422-11082477)
chr6 (8-66)||(34177817-34177874)
chr6 (8-66)||(35129231-35129288)
[»] chr2 (10 HSPs)
chr2 (8-66)||(6110376-6110433)
chr2 (8-66)||(41528184-41528241)
chr2 (14-63)||(45085188-45085236)
chr2 (18-64)||(14873859-14873905)
chr2 (8-66)||(28599324-28599381)
chr2 (8-66)||(35517050-35517107)
chr2 (18-64)||(45660261-45660306)
chr2 (19-64)||(25571943-25571987)
chr2 (34-66)||(18834123-18834155)
chr2 (16-64)||(19263998-19264045)
[»] scaffold0774 (1 HSPs)
scaffold0774 (14-60)||(3610-3655)
[»] scaffold0300 (1 HSPs)
scaffold0300 (8-66)||(749-806)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 76 - 299
Target Start/End: Original strand, 48802693 - 48802916
Alignment:
Q  76 tattatgggacggagggagtatcgtataagtgcaattgtataagctatttttataaaaagataaataaagtcaaaccgtttttataagctatttaagaga 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48802693 tattatgggacggagggagtatcgtataagtgcaattgtataagctatctttataaaaagataaataaagtcaaaccgtttttataagctatttaagaga 48802792  T
Q  176 gcttatgcacatggcataacttgtttctataaactctcacagaatgtcatttgcttggtgaagagcaacatttgaatactaacctctacgaagcaatcat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48802793 gcttatgcacatggcataacttgtttctataaactctcacagaatgtcatttgcttggtgaagagcaacatttgaatactaacctctacgaagcaatcat 48802892  T
Q  276 ggaaaaccatgcgaaggagctttc 299  Q
    ||||||||||||||||||||||||    
T  48802893 ggaaaaccatgcgaaggagctttc 48802916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 6438028 - 6437982
Alignment:
Q  18 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  6438028 gataaaagtttgtttttttttgcttatattttgggacaaagaaaatg 6437982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 11054443 - 11054500
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  11054443 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 11054500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 23311728 - 23311785
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    |||||||||||||||||||||   | ||||| |||||||||||||||||||||||||||    
T  23311728 tcttgaaaaagataaaagtttgact-tttttgcttatattttgggacaaagaaaatgtg 23311785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 36546531 - 36546474
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    |||||||||||| |||||||| | | ||||| |||||||||||||||||||||||||||    
T  36546531 tcttgaaaaagacaaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 36546474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 36561784 - 36561841
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    |||||||||||| |||||||| | | ||||| |||||||||||||||||||||||||||    
T  36561784 tcttgaaaaagacaaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 36561841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 48802618 - 48802674
Alignment:
Q  8 tcttgaaaaagataaaagtttatttatttt---ttcttatattttgggacaaagaaa 61  Q
    ||||||||||||||||||||| ||| ||||   ||||||||||||||||||||||||    
T  48802618 tcttgaaaaagataaaagtttgttttttttttcttcttatattttgggacaaagaaa 48802674  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 23910630 - 23910687
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||| ||| | | ||||| |||||||||||||||||| ||||||||    
T  23910630 tcttgaaaaagataaaaatttgtct-tttttgcttatattttgggacaaaaaaaatgtg 23910687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14752382 - 14752429
Alignment:
Q  16 aagataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||||    
T  14752382 aagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatg 14752429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 28875356 - 28875309
Alignment:
Q  16 aagataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||||||| | ||||| ||||||||||||||||| |||||||    
T  28875356 aagataaaagtttatat-tttttgcttatattttgggacaatgaaaatg 28875309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 41086563 - 41086621
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  41086563 tcttgaaaaagataaaagtttgtctttttttgcttatattttgggacaaagaaaatgtg 41086621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 7022580 - 7022637
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  7022580 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 7022637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 7858511 - 7858454
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  7858511 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 7858454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 13143706 - 13143661
Alignment:
Q  18 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||    
T  13143706 gataaaagtttatct-tttttgcttatattttgggacaaagaaaatg 13143661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 26483515 - 26483460
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 65  Q
    |||||||||| |||||||||| | |  ||||||||||||||||| |||||||||||||    
T  26483515 tcttgaaaaaaataaaagtttgtgt--tttttcttatattttggtacaaagaaaatgt 26483460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 8107834 - 8107882
Alignment:
Q  16 aagataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||| ||| | | ||||| |||||||||||||||||||||||||    
T  8107834 aagataaaaatttgtctttttttgcttatattttgggacaaagaaaatg 8107882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 28348539 - 28348511
Alignment:
Q  34 ttttttcttatattttgggacaaagaaaa 62  Q
    |||||||||||||||||||||||||||||    
T  28348539 ttttttcttatattttgggacaaagaaaa 28348511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 34890390 - 34890437
Alignment:
Q  16 aagataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||||    
T  34890390 aagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatg 34890437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 35923235 - 35923180
Alignment:
Q  10 ttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  35923235 ttgaaaaagataaaagtttatct-ttttttattatattttgggacaaagaaaatgtg 35923180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 18102514 - 18102457
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  18102514 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 18102457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 25737802 - 25737859
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  25737802 tcttggaaaagataaaagttttttt-tttttgcttatattttgggacaaagaaaatgtg 25737859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 47557922 - 47557979
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    |||||||||| |||||||||| | | ||||| |||||||||||||||||||||||||||    
T  47557922 tcttgaaaaacataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 47557979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 39174235 - 39174181
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 63  Q
    ||||||||||||||||||||| | | ||||| |||||||||||| |||||||||||    
T  39174235 tcttgaaaaagataaaagtttgtct-tttttacttatattttggaacaaagaaaat 39174181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 5276149 - 5276214
Alignment:
Q  95 tatcgtataagtgcaattgtataagctatttttata--aaaagataa-ataaagtcaaaccgtttt 157  Q
    |||||| |||||||   |||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  5276149 tatcgtttaagtgcttatgtataagctatttttataacaaaagataacataaagtcaaaccgtttt 5276214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 6190974 - 6190944
Alignment:
Q  34 ttttttcttatattttgggacaaagaaaatg 64  Q
    |||||||||||||||||||||||||||||||    
T  6190974 ttttttcttatattttgggacaaagaaaatg 6190944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 14805855 - 14805798
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||  |||||||||||||||||||||||||||    
T  14805855 tcttggaaaagataaaagtttgtctgttttg-cttatattttgggacaaagaaaatgtg 14805798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 15252849 - 15252792
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||  |||||||||||||||||||||||||||    
T  15252849 tcttggaaaagataaaagtttgtctgttttg-cttatattttgggacaaagaaaatgtg 15252792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 44877835 - 44877792
Alignment:
Q  18 gataaaagtttatttattttttcttatattttgggacaaagaaaat 63  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||    
T  44877835 gataaaagtttaatt--tttttcttatattttgggacaaagaaaat 44877792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 46760435 - 46760487
Alignment:
Q  10 ttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 63  Q
    |||||||| |||||||||| | | ||||| ||||||||||||||||||||||||    
T  46760435 ttgaaaaaaataaaagtttgtct-tttttacttatattttgggacaaagaaaat 46760487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 4910864 - 4910896
Alignment:
Q  34 ttttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| |||||||||||||||||||||||||||    
T  4910864 tttttgcttatattttgggacaaagaaaatgtg 4910896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 16562708 - 16562676
Alignment:
Q  34 ttttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| |||||||||||||||||||||||||||    
T  16562708 tttttacttatattttgggacaaagaaaatgtg 16562676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 16602954 - 16602986
Alignment:
Q  34 ttttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| |||||||||||||||||||||||||||    
T  16602954 tttttacttatattttgggacaaagaaaatgtg 16602986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 25944522 - 25944475
Alignment:
Q  16 aagataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||||    
T  25944522 aagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatg 25944475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 77942 - 77885
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  77942 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 77885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 842742 - 842799
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  842742 tcttggaaaagataaaagtttatct-tttttgcttatattttgggacaaagaaaatgtg 842799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 6686368 - 6686311
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||||| | |||| | ||||||||||||||||||||||||||    
T  6686368 tcttggaaaagataaaagtttatcttttttgt-ttatattttgggacaaagaaaatgtg 6686311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 7096255 - 7096182
Alignment:
Q  112 tgtataagctatttttataa--aaagataaa-taaagtcaaaccgtttttataagctatttaagagagcttatg 182  Q
    |||||||||||||| |||||  ||||||||| |||||||||||| |||| ||||||||||  ||||||||||||    
T  7096255 tgtataagctatttctataacaaaagataaaataaagtcaaaccattttcataagctattatagagagcttatg 7096182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 11262060 - 11262117
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  11262060 tcttggaaaagataaaagtttgtct-tttttacttatattttgggacaaagaaaatgtg 11262117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 43590138 - 43590195
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| |||||||||||| ||||||||||||||    
T  43590138 tcttgaaaaagataaaagtttgtat-tttttgcttatattttggtacaaagaaaatgtg 43590195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 25840793 - 25840760
Alignment:
Q  33 attttttcttatattttgggacaaagaaaatgtg 66  Q
    |||||| |||||||||||||||||||||||||||    
T  25840793 atttttgcttatattttgggacaaagaaaatgtg 25840760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 9957631 - 9957678
Alignment:
Q  16 aagataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||||    
T  9957631 aagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatg 9957678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 37522772 - 37522823
Alignment:
Q  14 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||| | | ||||| ||||||||||||||| |||||||||||    
T  37522772 aaaagataaaagtttgtct-tttttgcttatattttgggacgaagaaaatgtg 37522823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 37562944 - 37562995
Alignment:
Q  14 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||| | | ||||| ||||||||||||||| |||||||||||    
T  37562944 aaaagataaaagtttgtct-tttttgcttatattttgggacgaagaaaatgtg 37562995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 41414778 - 41414834
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 65  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||    
T  41414778 tcttgaaaaagataaaagtttgtct-tttttacttatattttgggacaaagaaaatgt 41414834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 47867862 - 47867806
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 65  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||    
T  47867862 tcttgaaaaagataaaagtttttct-tttttgcttatattttgggacaaagaaaatgt 47867806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 14332742 - 14332685
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  14332742 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 14332685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 26916308 - 26916251
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||| ||||||||||||| | ||||| ||||||||||| |||||||||||||||    
T  26916308 tcttgaaaaggataaaagtttatct-tttttgcttatattttgagacaaagaaaatgtg 26916251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 2229224 - 2229173
Alignment:
Q  14 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  2229224 aaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 2229173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28669169 - 28669226
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||| ||| |   ||||| |||||||||||||||||||||||||||    
T  28669169 tcttgaaaaagataaaaatttgtcc-tttttgcttatattttgggacaaagaaaatgtg 28669226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 30012131 - 30012163
Alignment:
Q  34 ttttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| |||||||||||||||||||||||||||    
T  30012131 tttttgcttatattttgggacaaagaaaatgtg 30012163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 35691376 - 35691320
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 65  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||    
T  35691376 tcttgaaaaagataaaaatttattt-tttttacttatattttggtacaaagaaaatgt 35691320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 12449143 - 12449200
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  12449143 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 12449200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 32624182 - 32624239
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  32624182 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 32624239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 39555762 - 39555819
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  39555762 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 39555819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 43667476 - 43667533
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| ||||||||||| |||||||||||||||    
T  43667476 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgagacaaagaaaatgtg 43667533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 28077186 - 28077103
Alignment:
Q  101 ataagtgcaattgtataagctatttttataa--aaagataaat-aaagtcaaaccgtttttataagctatttaagagagcttat 181  Q
    ||||||| | ||||||||||||||| |||||  |||||||||  ||| |||||| ||||| ||||||||||| |||||||||||    
T  28077186 ataagtgtatttgtataagctatttctataaccaaagataaaagaaaatcaaactgttttcataagctattttagagagcttat 28077103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 24190455 - 24190399
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | |  ||||||||||||||||| ||||||||||||||    
T  24190455 tcttggaaaagataaaagtttgtct--tttttcttatattttggtacaaagaaaatgtg 24190399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 2126017 - 2125965
Alignment:
Q  13 aaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    |||||||||||||||| | | ||||| |||||||||| ||||||||||||||||    
T  2126017 aaaaagataaaagtttgtct-tttttacttatattttaggacaaagaaaatgtg 2125965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 16854082 - 16854034
Alignment:
Q  18 gataaaagtttatttatttttt--cttatattttgggacaaagaaaatg 64  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||||    
T  16854082 gataaaagtttgtttttttttttgcttatattttgggacaaagaaaatg 16854034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 24728845 - 24728889
Alignment:
Q  19 ataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||    
T  24728845 ataaaaatttatttatttt-tcttatattttgagacaaagaaaatg 24728889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 154846 - 154792
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 63  Q
    ||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||    
T  154846 tcttgaaaaagataaaagtttatct-tttttacttatattttgagacaaagaaaat 154792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 3095897 - 3095954
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  3095897 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 3095954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 21542397 - 21542346
Alignment:
Q  14 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  21542397 aaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 21542346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 11082422 - 11082477
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 65  Q
    ||||||||||||||||||||| | |  |||| |||||||||||| |||||||||||||    
T  11082422 tcttgaaaaagataaaagtttgtgt--ttttgcttatattttggtacaaagaaaatgt 11082477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 34177817 - 34177874
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||| ||||||||||||||    
T  34177817 tcttggaaaagataaaagtttgtgt-tttttacttatattttggtacaaagaaaatgtg 34177874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 35129231 - 35129288
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| ||| |||||||||||||||||||||||    
T  35129231 tcttggaaaagataaaagtttgtct-tttttgcttgtattttgggacaaagaaaatgtg 35129288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 6110376 - 6110433
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  6110376 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 6110433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 41528241 - 41528184
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||| ||||||||    
T  41528241 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaacaaaatgtg 41528184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 45085236 - 45085188
Alignment:
Q  14 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 63  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  45085236 aaaagataaaagtttatct-tttttgcttatattttgggacaaagaaaat 45085188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 14873905 - 14873859
Alignment:
Q  18 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||| ||| ||| ||||| |||||||||||||||||||||||||    
T  14873905 gataaaaatttgtttttttttgcttatattttgggacaaagaaaatg 14873859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28599324 - 28599381
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | |||||  ||||||||||||||||||||||||||    
T  28599324 tcttggaaaagataaaagtttgtct-tttttgattatattttgggacaaagaaaatgtg 28599381  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 35517107 - 35517050
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||||||||||||||||||| | | ||||| |||||||||||| || |||||||||||    
T  35517107 tcttgaaaaagataaaagtttgtct-tttttgcttatattttggtacgaagaaaatgtg 35517050  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 45660306 - 45660261
Alignment:
Q  18 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  45660306 gataaaagtttgttt-tttttgcttatattttgggacaaagaaaatg 45660261  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 25571987 - 25571943
Alignment:
Q  19 ataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||    
T  25571987 ataaaagtttgttt-tttttgcttatattttgggacaaagaaaatg 25571943  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 18834123 - 18834155
Alignment:
Q  34 ttttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| |||||||||||||||||||||||||||    
T  18834123 tttttgcttatattttgggacaaagaaaatgtg 18834155  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 19264045 - 19263998
Alignment:
Q  16 aagataaaagtttatttattttttcttatattttgggacaaagaaaatg 64  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||||    
T  19264045 aagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatg 19263998  T

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Target: scaffold0774 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 3610 - 3655
Alignment:
Q  14 aaaagataaaagtttatttattttttcttatattttgggacaaagaa 60  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||    
T  3610 aaaagataaaagtttatct-tttttgcttatattttgggacaaagaa 3655  T

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Target: scaffold0300 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 749 - 806
Alignment:
Q  8 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 66  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||| ||||||||||||||    
T  749 tcttggaaaagataaaagtttgtgt-tttttgcttatattttggtacaaagaaaatgtg 806  T

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