View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6126_high_7 (Length: 279)
Name: NF6126_high_7
Description: NF6126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6126_high_7 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 21537236 - 21537514
Alignment:
| Q |
1 |
ttttgaaacaccgtgaaaaatctaatgcgaagattttgaataaggttttgaaacacggtgaaaaatctagtgccttgtgtaacattgaagttgagcatca |
100 |
Q |
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| T |
21537236 |
ttttgaaacaccgtaaaaaatataatgcgaagattttgaataaggttttgaaacacggtgaaaaatctagtgccttgtgtaacattgaagttgagcatca |
21537335 |
T |
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| Q |
101 |
ggggtatgttccatctaaacttttgagcaagatgatcaattgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttcgtgataatgaa |
200 |
Q |
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| T |
21537336 |
ggggtatgttccatctaaacttttgagcaagatgatcaattgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttcgtgataaggaa |
21537435 |
T |
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| Q |
201 |
agtaacaccctactttttcactcaatattctcccttcattctttgaagtgtcttgacctttcattttatacatatggat |
279 |
Q |
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| T |
21537436 |
agtaataccctactttttcgctcaatattctcccttcattctttgaagtgtcttgacctttcattttatacatatggat |
21537514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 29 - 270
Target Start/End: Original strand, 21521537 - 21521784
Alignment:
| Q |
29 |
gaagattttgaataaggttttgaaacacggtgaaaaatctagtgccttgtg------taacattgaagttgagcatcaggggtatgttccatctaaactt |
122 |
Q |
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| T |
21521537 |
gaagtttttgaataaggttttgaaacaccatgaaaaatctagtgcctcgtgcctacgtaatattgaagttgatcatcaggggtatgttccatcaaaactt |
21521636 |
T |
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| Q |
123 |
ttgagcaagatgatcaattgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttcgtgataatgaaagtaacaccctactttttcact |
222 |
Q |
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| T |
21521637 |
ttgagcaagatgagcaattgtgctgtaaatcataaggtggaaaaattcaaagttggcacctaccttcgtgataaggaaagtaatatgctactttttcgct |
21521736 |
T |
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| Q |
223 |
caatattctcccttcattctttgaagtgtcttgacctttcattttata |
270 |
Q |
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| T |
21521737 |
caatattctcccttcattctttgaagtgtcttgacctttcattttata |
21521784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21537191 - 21537256
Alignment:
| Q |
1 |
ttttgaaacaccgtgaaaaatctaatgcgaagattttgaataaggttttgaaacacggtgaaaaat |
66 |
Q |
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| T |
21537191 |
ttttgaaacaccgtgaaaaatctagtgcgaagattttgaataaggttttgaaacaccgtaaaaaat |
21537256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 265
Target Start/End: Complemental strand, 20426788 - 20426563
Alignment:
| Q |
41 |
taaggttttgaaacacggtgaaaaatctagtgccttgtgtaacattgaagttgagcatcaggggtatgttccatctaaacttttgagcaagatgat-caa |
139 |
Q |
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| T |
20426788 |
taaggttttgcaacaccgtgaaggctctagtgcctagtgtaatattgaagttgatcatgaatgatgtattccccaaaaactgttgagcaagttgattcaa |
20426689 |
T |
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| Q |
140 |
ttgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttcgtgataatgaaagtaacaccctactttttcactcaatattctcccttcat |
239 |
Q |
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| T |
20426688 |
ttttaatgtatgacataacgtggaaaaattcaaagttggcacctaccttcataacgaggaaaataatatgctactttttcaatcaatattttcccctcat |
20426589 |
T |
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| Q |
240 |
tctttgaagtgtcttgacctttcatt |
265 |
Q |
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| T |
20426588 |
tctttaaattatctggaccgttcatt |
20426563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 21537174 - 21537218
Alignment:
| Q |
29 |
gaagattttgaataaggttttgaaacacggtgaaaaatctagtgc |
73 |
Q |
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| T |
21537174 |
gaagtttttgaataaggttttgaaacaccgtgaaaaatctagtgc |
21537218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 265
Target Start/End: Original strand, 20427380 - 20427483
Alignment:
| Q |
162 |
gaaaaattcaaagttggcacctaccttcgtgataatgaaagtaacaccctactttttcactcaatattctcccttcattctttgaagtgtcttgaccttt |
261 |
Q |
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| T |
20427380 |
gaaaaattcaaatttggcacctaccttcataatgaggaaagtaatatgctaatttttcaatcaatattttcctctcattgtttaaattttcttgaccttt |
20427479 |
T |
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| Q |
262 |
catt |
265 |
Q |
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|||| |
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| T |
20427480 |
catt |
20427483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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