View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6126_low_2 (Length: 459)

Name: NF6126_low_2
Description: NF6126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6126_low_2
NF6126_low_2
[»] chr2 (12 HSPs)
chr2 (18-450)||(14007527-14007962)
chr2 (229-339)||(45035155-45035265)
chr2 (115-216)||(20957437-20957538)
chr2 (230-339)||(45033361-45033470)
chr2 (118-216)||(20957612-20957710)
chr2 (231-339)||(17308689-17308797)
chr2 (264-339)||(1015756-1015831)
chr2 (227-333)||(3372458-3372564)
chr2 (118-226)||(17149055-17149163)
chr2 (221-324)||(33187188-33187291)
chr2 (269-339)||(30191620-30191690)
chr2 (120-160)||(8760002-8760042)
[»] chr3 (12 HSPs)
chr3 (115-333)||(26667004-26667223)
chr3 (115-243)||(25836367-25836495)
chr3 (235-339)||(27682197-27682301)
chr3 (264-339)||(41874545-41874620)
chr3 (235-339)||(28133726-28133830)
chr3 (118-225)||(9032830-9032937)
chr3 (115-212)||(548092-548187)
chr3 (229-339)||(4602293-4602403)
chr3 (149-217)||(43819944-43820012)
chr3 (229-339)||(4609105-4609215)
chr3 (235-332)||(26317951-26318048)
chr3 (229-270)||(27972591-27972632)
[»] chr5 (12 HSPs)
chr5 (115-340)||(6742425-6742653)
chr5 (229-339)||(10410798-10410908)
chr5 (115-226)||(4897423-4897532)
chr5 (105-212)||(21637272-21637381)
chr5 (229-328)||(10412371-10412470)
chr5 (122-243)||(33689869-33689990)
chr5 (235-339)||(8081508-8081612)
chr5 (264-339)||(25725808-25725883)
chr5 (115-224)||(33688153-33688262)
chr5 (264-339)||(25502025-25502100)
chr5 (232-339)||(25506938-25507045)
chr5 (266-333)||(40382763-40382830)
[»] chr8 (7 HSPs)
chr8 (117-339)||(35674837-35675058)
chr8 (221-339)||(30634229-30634347)
chr8 (234-326)||(35673345-35673437)
chr8 (118-215)||(29456284-29456381)
chr8 (264-339)||(1175148-1175223)
chr8 (234-331)||(1173513-1173610)
chr8 (115-150)||(35673477-35673512)
[»] chr7 (10 HSPs)
chr7 (115-226)||(29598097-29598208)
chr7 (105-226)||(21633313-21633436)
chr7 (264-332)||(29924665-29924733)
chr7 (105-226)||(21631352-21631467)
chr7 (115-226)||(21631122-21631225)
chr7 (247-332)||(21464528-21464615)
chr7 (163-244)||(3232944-3233025)
chr7 (122-216)||(21633093-21633179)
chr7 (105-190)||(9878298-9878384)
chr7 (163-212)||(29856101-29856150)
[»] chr6 (6 HSPs)
chr6 (115-224)||(30488432-30488541)
chr6 (221-340)||(15689026-15689145)
chr6 (115-188)||(25050859-25050932)
chr6 (179-311)||(9373599-9373730)
chr6 (221-332)||(34350341-34350452)
chr6 (115-195)||(26857816-26857895)
[»] chr4 (11 HSPs)
chr4 (118-243)||(42664932-42665057)
chr4 (229-333)||(28395559-28395667)
chr4 (119-226)||(10032679-10032785)
chr4 (115-187)||(42665175-42665247)
chr4 (115-226)||(18812662-18812774)
chr4 (272-340)||(4847687-4847755)
chr4 (105-188)||(18807515-18807599)
chr4 (165-216)||(5653307-5653358)
chr4 (115-226)||(8818744-8818853)
chr4 (116-155)||(19223142-19223181)
chr4 (151-229)||(8678562-8678640)
[»] scaffold0060 (1 HSPs)
scaffold0060 (105-215)||(9093-9205)
[»] chr1 (6 HSPs)
chr1 (119-226)||(1284831-1284937)
chr1 (221-340)||(44782182-44782301)
chr1 (235-339)||(46679708-46679812)
chr1 (140-226)||(33072760-33072845)
chr1 (116-226)||(10653488-10653594)
chr1 (115-210)||(41892084-41892178)
[»] scaffold0245 (2 HSPs)
scaffold0245 (119-226)||(9476-9582)
scaffold0245 (119-226)||(11098-11204)
[»] scaffold0229 (1 HSPs)
scaffold0229 (119-226)||(9804-9910)
[»] scaffold0160 (1 HSPs)
scaffold0160 (118-198)||(28412-28492)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 14007527 - 14007962
Alignment:
Q  18 catgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtataattagataagcatggaacaaattaagcatactattagagtag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007527 catgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtataattagataagcatggaacaaattaagcatactattagagtag 14007626  T
Q  118 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagacta----actcacccctataaataactc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    |||||||| ||||||||||||    
T  14007627 tgaataaaccatagttagttaatatgtaaactatggttagttggttggttaggtagttaagagttagttagactaacttactcacccatataaataactc 14007726  T
Q  214 tcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaa 313  Q
    ||| |||||||||||||| ||||||||||||||||||||||| ||||   ||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  14007727 tcaccattgtactatttttatatcttttattcatttctatctatgtc---actcctagagagaattagacaatccatctttccattgcatttgacctaga 14007823  T
Q  314 accatggaatcctttgattcctaacacatgcaatcttctatcaattagttaaactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaa 413  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007824 accatggaatcctttgattcataacacatgcaatcttctatcaattggttaaactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaa 14007923  T
Q  414 ataacgtgttctagtttctc--tagatgtttagaataat 450  Q
    ||||| ||||||||||||||  |||||||||||||||||    
T  14007924 ataacatgttctagtttctctttagatgtttagaataat 14007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 45035155 - 45035265
Alignment:
Q  229 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 328  Q
    ||||| |||||||||||||||  |||||||| || |||||||||||||| || |||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  45035155 tttcaaatcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatccttt 45035254  T
Q  329 gattcctaaca 339  Q
    ||||| |||||    
T  45035255 gattcataaca 45035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 20957437 - 20957538
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||||||||||||||||| |||    
T  20957437 tagtgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtct 20957536  T
Q  215 ca 216  Q
    ||    
T  20957537 ca 20957538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 230 - 339
Target Start/End: Original strand, 45033361 - 45033470
Alignment:
Q  230 ttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttg 329  Q
    ||||||||||||||||||||  |||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  45033361 ttcatatcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttttg 45033460  T
Q  330 attcctaaca 339  Q
    |||| |||||    
T  45033461 attcataaca 45033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 20957612 - 20957710
Alignment:
Q  118 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 216  Q
    |||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  20957612 tgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtctca 20957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 339
Target Start/End: Original strand, 17308689 - 17308797
Alignment:
Q  231 tcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttga 330  Q
    ||||||||||||| || || | |||| || || |||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  17308689 tcatatcttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttga 17308788  T
Q  331 ttcctaaca 339  Q
    ||| |||||    
T  17308789 ttcataaca 17308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 1015756 - 1015831
Alignment:
Q  264 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 339  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  1015756 actccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 1015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 3372564 - 3372458
Alignment:
Q  227 attttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 326  Q
    |||||||||| |||||||||||| |||||||||  | ||||| ||||||||||| | |||| |||||||||||| |||||||||| ||| |||||||| |    
T  3372564 attttcatatattttattcatttttatctttgtggtgactcccagagagaattatagaatctatctttccattgtatttgacctagaactatggaatctt 3372465  T
Q  327 ttgattc 333  Q
    |||||||    
T  3372464 ttgattc 3372458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 17149163 - 17149055
Alignment:
Q  118 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 217  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||| || ||| ||| ||| |||| ||||||||||| ||| |||| ||| |||| |||||    
T  17149163 tgaataaaccatagttagttgataggtaaattatggttagttggttgtttaagtaattaggagtcagttagactaattcatccctgtaagtaaccctcat 17149064  T
Q  218 cattgtact 226  Q
    |||||||||    
T  17149063 cattgtact 17149055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 33187291 - 33187188
Alignment:
Q  221 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 320  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||| |||||||||||| ||||||||||| ||||||||||| ||| ||||    
T  33187291 tgtactatttcattatcttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccattacatttgacctagaacaatgg 33187192  T
Q  321 aatc 324  Q
    ||||    
T  33187191 aatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 30191620 - 30191690
Alignment:
Q  269 tagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 339  Q
    |||||||||||| | |||| |||||| ||||| |||||| ||| ||||||||||||||||||||| |||||    
T  30191620 tagagagaattatataatctatcttttcattgtatttgatctagaaccatggaatcctttgattcataaca 30191690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 8760002 - 8760042
Alignment:
Q  120 aataaaccatagttagttaatatgtaaactatggttagttg 160  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  8760002 aataaatcataattagttgatatgtaaactatggttagttg 8760042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 115 - 333
Target Start/End: Complemental strand, 26667223 - 26667004
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26667223 tagtgaattaaccatagttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataactct 26667124  T
Q  215 catcattgtactattttcatatcttttattca-tttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaa 313  Q
    || |||||||| |||||||||||||||||||| ||||||||||||| || |||| ||| ||||||||||||||| | |||||||| |||||||| ||| |    
T  26667123 caccattgtaccattttcatatcttttattcattttctatctttgtgatgactcttagggagaattacacaatctacctttccatcgcatttgatctaga 26667024  T
Q  314 accatggaatcctttgattc 333  Q
    |||||| |||||||||||||    
T  26667023 accatgaaatcctttgattc 26667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 25836367 - 25836495
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    ||||||||||||||||||||||| |||  |||||||||| ||||||| | |||||||||||| |||||||||||||||  ||| || |||||||||||||    
T  25836367 tagtgaataaaccatagttagttgatagataaactatggctagttggttagttaggtagttaggagttagttagactagttcatccttataaataactct 25836466  T
Q  215 catcattgtactattttcatatcttttat 243  Q
    || ||||||||| | ||  ||||||||||    
T  25836467 caccattgtactctcttgttatcttttat 25836495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 339
Target Start/End: Original strand, 27682197 - 27682301
Alignment:
Q  235 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 334  Q
    |||||||||||||||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  27682197 atcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 27682296  T
Q  335 taaca 339  Q
    |||||    
T  27682297 taaca 27682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 41874545 - 41874620
Alignment:
Q  264 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 339  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  41874545 actcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 41874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 339
Target Start/End: Original strand, 28133726 - 28133830
Alignment:
Q  235 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 334  Q
    |||||||||||| ||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  28133726 atcttttattcaattgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 28133825  T
Q  335 taaca 339  Q
    |||||    
T  28133826 taaca 28133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 9032937 - 9032830
Alignment:
Q  118 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 217  Q
    |||||||| ||||||||||| ||||| ||||||||||||| ||| |||||  ||||||||||||||||||||||||||  ||| |||||||| || |||     
T  9032937 tgaataaatcatagttagttgatatgaaaactatggttagctggttggttgagtagttaagagttagttagactaactttcccttataaatagctttcac 9032838  T
Q  218 cattgtac 225  Q
    ||||||||    
T  9032837 cattgtac 9032830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 548092 - 548187
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataact 212  Q
    ||||||||||| |||| |||| ||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  548092 tagtgaataaatcatatttagataatg-gtaaactatgattagttggttggttaggtagttaagagttagttagactaactca-cactataaataact 548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 4602293 - 4602403
Alignment:
Q  229 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 328  Q
    |||||||||||||||| | ||  |||||||| || |||| ||||||||| || |||||  | ||||||||||||||||| ||| ||||||||||||||||    
T  4602293 tttcatatcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatccttt 4602392  T
Q  329 gattcctaaca 339  Q
    ||||| |||||    
T  4602393 gattcataaca 4602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 43820012 - 43819944
Alignment:
Q  149 tatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 217  Q
    |||| |||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||    
T  43820012 tatgattagttggttggttaggtagttaaaagttagtaagactaactcactcctataaataaccctcat 43819944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 4609105 - 4609215
Alignment:
Q  229 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 328  Q
    |||||||||||||||||| ||  |||||||| || ||| |||||||||| || |||||  | ||||| ||||||||||| ||| ||| || |||||||||    
T  4609105 tttcatatcttttattcaattgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttgatctagaacaattgaatccttt 4609204  T
Q  329 gattcctaaca 339  Q
    ||||| |||||    
T  4609205 gattcataaca 4609215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 26318048 - 26317951
Alignment:
Q  235 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 332  Q
    |||||||||||||||||||  || | || ||||||  |||| | || |||||| |||||| ||||| ||||||  || ||||||| ||||||||||||    
T  26318048 atcttttattcatttctattgttctaatgactcctcaagagcaataaacaatctatcttttcattgtatttgatttagaaccatgaaatcctttgatt 26317951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 27972591 - 27972632
Alignment:
Q  229 tttcatatcttttattcatttctatctttgtcataactccta 270  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  27972591 tttcatatcttttattcatttctatatttgtgatgactccta 27972632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 115 - 340
Target Start/End: Original strand, 6742425 - 6742653
Alignment:
Q  115 tagtgaataaacca---tagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataac 211  Q
    ||||||||||||||   |||||| ||||||| |||| ||||||||||||| |||||||||| |||||||||||||| ||||| | ||  |||||||||||    
T  6742425 tagtgaataaaccaatatagttaattaatatataaattatggttagttggttggttaggtaattaagagttagttaaactaatttacttctataaataac 6742524  T
Q  212 tctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgaccta 311  Q
    |||||  ||||||||||||| |||| ||||||| |||||||||||||| || |||| ||||||||| ||||||||| ||||||||||||||||||| |||    
T  6742525 tctcactattgtactattttgatattttttatttatttctatctttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatcta 6742624  T
Q  312 aaaccatggaatcctttgattcctaacac 340  Q
     ||| |||||||| |||||||| ||||||    
T  6742625 gaactatggaatcgtttgattcataacac 6742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 10410798 - 10410908
Alignment:
Q  229 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 328  Q
    ||||| |||||||||||||||  |||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10410798 tttcacatcttttattcatttgcatctttgggatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatccttt 10410897  T
Q  329 gattcctaaca 339  Q
    ||||| |||||    
T  10410898 gattcataaca 10410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 4897532 - 4897423
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4897532 tagtgaataaaccatagttagataatg-gtaaactatggttagttggttgattaggtagttaagagttagttagactaactca-ccctataaataactct 4897435  T
Q  215 catcattgtact 226  Q
    ||  ||||||||    
T  4897434 caatattgtact 4897423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 21637381 - 21637272
Alignment:
Q  105 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 202  Q
    ||||||||||||  ||||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| |    
T  21637381 actattagagtatagtgaataaaccatagttagtttatatgagaactatagttagttggttggttaggtagttaggagttagttacactaactcaccctt 21637282  T
Q  203 ataaataact 212  Q
    ||||||||||    
T  21637281 ataaataact 21637272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 229 - 328
Target Start/End: Original strand, 10412371 - 10412470
Alignment:
Q  229 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 328  Q
    |||||||||||||||||||||  |||||||| |||| || |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||    
T  10412371 tttcatatcttttattcatttgcatctttgtgataattcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatccttt 10412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 33689869 - 33689990
Alignment:
Q  122 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcatt 221  Q
    |||||||||||||||||||| ||||||||||| || |||| | ||||||||||||||||| | |||||||||||  ||| |||||||| ||||||  |||    
T  33689869 taaaccatagttagttaataagtaaactatggataattggttagttaggtagttaagagtcaattagactaacttgcccttataaatagctctcactatt 33689968  T
Q  222 gtactattttcatatcttttat 243  Q
    ||||||||||  ||||||||||    
T  33689969 gtactattttgttatcttttat 33689990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 339
Target Start/End: Original strand, 8081508 - 8081612
Alignment:
Q  235 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 334  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||     
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattca 8081607  T
Q  335 taaca 339  Q
    |||||    
T  8081608 taaca 8081612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 25725883 - 25725808
Alignment:
Q  264 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 339  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  25725883 actcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 25725808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 33688153 - 33688262
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||||||||| | |||||||| |||| |||| |||| ||||    
T  33688153 tagtgattaaaccatagttagttaatatgtaaattatggttggttagttggttaggtatttaagagttactaagactaacccacctctattaatagctct 33688252  T
Q  215 catcattgta 224  Q
    || |||||||    
T  33688253 caccattgta 33688262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 25502100 - 25502025
Alignment:
Q  264 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 339  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |||||| |||||    
T  25502100 actcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcataaca 25502025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 25507045 - 25506938
Alignment:
Q  232 catatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 331  Q
    ||||| |||||| || || | ||||||| || | ||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||    
T  25507045 catattttttatacaattgtttctttgtaatgaatcccagagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttat 25506946  T
Q  332 tcctaaca 339  Q
    || |||||    
T  25506945 tcataaca 25506938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 40382830 - 40382763
Alignment:
Q  266 tcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattc 333  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  40382830 tcctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattc 40382763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 117 - 339
Target Start/End: Complemental strand, 35675058 - 35674837
Alignment:
Q  117 gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  35675058 gtgaataaatcatagttagttaatatgtaaactatggttagttggttagttagatagttaggagttagttagactaactcactcctataaataactctca 35674959  T
Q  217 tc-attgtactattttca-tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaa 314  Q
     | ||||   |||| ||| | |||   |||||||| ||||||||| || |||||||||||||||||||||||| | |||||||||||||||||| || ||    
T  35674958 actattg---tattctcattgtctaaaattcatttatatctttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaa 35674862  T
Q  315 ccatggaatcctttgattcctaaca 339  Q
    ||||| ||||||  ||||| |||||    
T  35674861 ccatgcaatcctcagattcgtaaca 35674837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 30634347 - 30634229
Alignment:
Q  221 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 320  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  30634347 tgtactatttcattatcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatag 30634248  T
Q  321 aatcctttgattcctaaca 339  Q
    ||||||||||||| |||||    
T  30634247 aatcctttgattcataaca 30634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 35673437 - 35673345
Alignment:
Q  234 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 326  Q
    |||||||||||||||| ||||| ||| || | || |||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||    
T  35673437 tatcttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 29456381 - 29456284
Alignment:
Q  118 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctc 215  Q
    ||||| || |||||||||| |||| ||||||||| |||||||   |||||||||||||| |||||| |||||||||||||||| | ||||||||||||    
T  29456381 tgaatcaatcatagttagtcaataagtaaactatagttagttaattggttaggtagttatgagttatttagactaactcacccttgtaaataactctc 29456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 1175148 - 1175223
Alignment:
Q  264 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 339  Q
    ||||||||| | |||||||||||| |||||| |||| ||||||||||| |||||| ||||||||| |||| |||||    
T  1175148 actcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcataaca 1175223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 1173513 - 1173610
Alignment:
Q  234 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 331  Q
    |||||||||| || || | |||| || || ||||||||||||||||| |||||| || ||| |||||||||||| ||| ||  |||||||||||||||    
T  1173513 tatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatcctttgat 1173610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 35673512 - 35673477
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaacta 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  35673512 tagtgaataaaccatagttagttaatatgtaaacta 35673477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 29598208 - 29598097
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29598208 tagtgaataaaccatagttagttaatatgtaaactatggttagtttgtaggttaggtggttaggagttagttagactaactcacccctataaataactct 29598109  T
Q  215 catcattgtact 226  Q
    || |||| ||||    
T  29598108 caccattatact 29598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 21633436 - 21633313
Alignment:
Q  105 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 202  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| |||||||||| ||||| ||||| ||    
T  21633436 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttaggtggttaggagttagttatactaattcaccact 21633337  T
Q  203 ataaataactctcatcattgtact 226  Q
    |||||||||| ||| |||||||||    
T  21633336 ataaataactatcaccattgtact 21633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 29924665 - 29924733
Alignment:
Q  264 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 332  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  29924665 actcctagagagaattacacaatctatctttccattgcatttgacctagaactatggaatcctttgatt 29924733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 21631467 - 21631352
Alignment:
Q  105 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 202  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||        ||||||||||||||||||||||||    
T  21631467 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttagg--------agttagttagactaactcacccct 21631376  T
Q  203 ataaataactctcatcattgtact 226  Q
    ||||||||| |||| |||||||||    
T  21631375 ataaataaccctcaccattgtact 21631352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 21631225 - 21631122
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||  ||||||        |||||||||||||||||||||||||||||||||| ||    
T  21631225 tagtgagtaaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactaactcacccctataaataaccct 21631134  T
Q  215 catcattgtact 226  Q
    || || ||||||    
T  21631133 caccagtgtact 21631122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 21464528 - 21464615
Alignment:
Q  247 tttctatctttgtcataactcctagag--agaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 332  Q
    |||||| |||||| || ||||||||||  |||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21464528 tttctacctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattctttgatt 21464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 3232944 - 3233025
Alignment:
Q  163 tggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtactattttcatatcttttatt 244  Q
    |||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||| | | ||  |||||||||||    
T  3232944 tggttaggtagttaagagtttgttacactaactcatccttataaataactctcatcattgtattttcttattatcttttatt 3233025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 21633179 - 21633093
Alignment:
Q  122 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 216  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||        ||||||||||||||| |||||||||||||||||| ||||    
T  21633179 taaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactatctcacccctataaataaccctca 21633093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 9878384 - 9878298
Alignment:
Q  105 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagac 190  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||  | ||||| |||||| |||||||||||||    
T  9878384 actattagagtatagtgaataaaccataggtagttaatatataaactatggttagttgtat-gttagatagttaggagttagttagac 9878298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 29856150 - 29856101
Alignment:
Q  163 tggttaggtagttaagagttagttagactaactcacccctataaataact 212  Q
    |||||||||||||| ||||||||||||| |||||||  ||||||||||||    
T  29856150 tggttaggtagttaggagttagttagaccaactcactactataaataact 29856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 30488432 - 30488541
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  30488432 tagtgaataaaccatagttagttaatatgtaaattatggtttgttggttggttagatagttaaaagttagttagactaactcacccctataaatagctct 30488531  T
Q  215 catcattgta 224  Q
    || |||||||    
T  30488532 caccattgta 30488541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 221 - 340
Target Start/End: Original strand, 15689026 - 15689145
Alignment:
Q  221 tgtactattttc-atatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatg 319  Q
    |||||||||||| || | |||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  15689026 tgtactattttctatcttttttattcatttctatctttgtgatgactc-tagagagaattacacaatctatctttccattgcatttgacctagaatcatg 15689124  T
Q  320 gaatcctttgattcctaacac 340  Q
    |||||||||||||| ||||||    
T  15689125 gaatcctttgattcataacac 15689145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 25050859 - 25050932
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 188  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  25050859 tagtgaataaaccatagttagataatatgtaaactatggttagttacttggttaggtagttaagagttagttag 25050932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 311
Target Start/End: Complemental strand, 9373730 - 9373599
Alignment:
Q  179 agttagttagactaactcacccctataaataactctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaat 278  Q
    ||||||||||||| ||  || | ||||||||||||| |  |||||||| | | || ||||||||||||||| ||||||||| || ||||||| ||| |||    
T  9373730 agttagttagacttaccgactcttataaataactcttacaattgtactctct-cacatcttttattcatttatatctttgttatgactcctatagaaaat 9373632  T
Q  279 tacacaatccatctttccattgcatttgaccta 311  Q
    |||||| || |||||||||||||||||||||||    
T  9373631 tacacattctatctttccattgcatttgaccta 9373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 332
Target Start/End: Complemental strand, 34350452 - 34350341
Alignment:
Q  221 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 320  Q
    ||||||||||   |||||||||| || || | |||| || || ||||||| ||||||||||| || | || ||||| ||| |||||||||| ||||||||    
T  34350452 tgtactatttcactatcttttatacaattgtttcttagtaatgactcctaaagagaattacataaactatttttccgttgtatttgacctagaaccatgg 34350353  T
Q  321 aatcctttgatt 332  Q
    ||||||||||||    
T  34350352 aatcctttgatt 34350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 26857816 - 26857895
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaact 195  Q
    |||||||||| |||||||||| | ||  ||||| ||  |||| |||| |||||||||||||||||||||||||||||||||    
T  26857816 tagtgaataagccatagttagatgatg-gtaaattagagttaattggttggttaggtagttaagagttagttagactaact 26857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 42664932 - 42665057
Alignment:
Q  118 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 217  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||  |||||     
T  42664932 tgaataaaccatagttagttaatatgtaaactacggttagttggttgtttaggtagttaagagttagttagactaactcacccttataaatagttctcac 42665031  T
Q  218 cattgtactattttcatatcttttat 243  Q
     |||||||||| ||  ||||||||||    
T  42665032 aattgtactatcttgttatcttttat 42665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 28395667 - 28395559
Alignment:
Q  229 tttcatatcttttattcatttctatct----ttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatc 324  Q
    |||||||||||||||||||||||||||    |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28395667 tttcatatcttttattcatttctatctatctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatc 28395568  T
Q  325 ctttgattc 333  Q
    |||||||||    
T  28395567 ctttgattc 28395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 10032785 - 10032679
Alignment:
Q  119 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 218  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||      
T  10032785 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagtcggttagactaactca-ccctataaataactctcact 10032687  T
Q  219 attgtact 226  Q
    ||||||||    
T  10032686 attgtact 10032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 42665247 - 42665175
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta 187  Q
    ||||||||||||||||||||||||||||||||| |||||||||||   || ||||||||||||||||||||||    
T  42665247 tagtgaataaaccatagttagttaatatgtaaattatggttagttatttgtttaggtagttaagagttagtta 42665175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 18812774 - 18812662
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta--gactaactcacccctataaataact 212  Q
    |||||||||||||||| |||| |||||||||||||||||||||||   | |||||||||||||||||||||||   ||||||||| | ||||||||| ||    
T  18812774 tagtgaataaaccataattagataatatgtaaactatggttagttacttagttaggtagttaagagttagttacgaactaactca-ctctataaatatct 18812676  T
Q  213 ctcatcattgtact 226  Q
    ||||  ||||||||    
T  18812675 ctcactattgtact 18812662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 4847755 - 4847687
Alignment:
Q  272 agagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaacac 340  Q
    ||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  4847755 agagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcataacac 4847687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 18807599 - 18807515
Alignment:
Q  105 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 188  Q
    ||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||||   ||||||||||| ||||||||||||||    
T  18807599 actattagagtatagtgaataaaccataactagataatatgtaaactatggttagttacttggttaggtag-taagagttagttag 18807515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 5653358 - 5653307
Alignment:
Q  165 gttaggtagttaagagttagttagactaactcacccctataaataactctca 216  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  5653358 gttaggtagttaggagttagttatactaactcacccctataaataagtctca 5653307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 8818853 - 8818744
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 214  Q
    ||||||||||| ||| ||||||||||| ||||||||  ||| ||| | |||||| |||||||| | ||||||||||||||||| |  |||||| ||||||    
T  8818853 tagtgaataaatcatggttagttaata-gtaaactagagtttgtttgttggttaagtagttaaaaattagttagactaactcatctttataaa-aactct 8818756  T
Q  215 catcattgtact 226  Q
     |||||| ||||    
T  8818755 tatcattatact 8818744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 19223181 - 19223142
Alignment:
Q  116 agtgaataaaccatagttagttaatatgtaaactatggtt 155  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  19223181 agtgaataaaccatagttagttaatatataaactatggtt 19223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 8678562 - 8678640
Alignment:
Q  151 tggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtactatt 229  Q
    ||||| ||||| ||| ||||||||||  |||||||||| ||||| ||||||||||||||||| |||  ||| |||||||    
T  8678562 tggttggttggttggctaggtagttagcagttagttagtctaacccacccctataaataactttcactattatactatt 8678640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 9205 - 9093
Alignment:
Q  105 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 202  Q
    ||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||    
T  9205 actattagagtatagtgaataaaccatagttagtttatatgtgaactatggttagttgtttggttaggtagttaggagttagttacactaactcacccct 9106  T
Q  203 ataaataactctc 215  Q
    |||||||||||||    
T  9105 ataaataactctc 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 1284831 - 1284937
Alignment:
Q  119 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 218  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  1284831 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcact 1284929  T
Q  219 attgtact 226  Q
    ||||||||    
T  1284930 attgtact 1284937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 44782301 - 44782182
Alignment:
Q  221 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 320  Q
    ||||||||||   |||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  44782301 tgtactatttcattatcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatgg 44782202  T
Q  321 aatcctttgattcctaacac 340  Q
    |||||||| |||| ||||||    
T  44782201 aatcctttaattcataacac 44782182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 339
Target Start/End: Original strand, 46679708 - 46679812
Alignment:
Q  235 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 334  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||     
T  46679708 atcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattca 46679807  T
Q  335 taaca 339  Q
    |||||    
T  46679808 taaca 46679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 33072760 - 33072845
Alignment:
Q  140 tatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtact 226  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||  ||||||||    
T  33072760 tatgtaaactatggttagttggttggttaggtagttaagagttagttag-ctgactcacccttataaataactctcactattgtact 33072845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 10653488 - 10653594
Alignment:
Q  116 agtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctc 215  Q
    ||||||||||  |||||||||| ||| ||||| |||||||||||||    |||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  10653488 agtgaataaagtatagttagtttatacgtaaattatggttagttgg----ttaggtggttaagagttagttagactaactcacccctgtaaatagctctc 10653583  T
Q  216 atcattgtact 226  Q
    |  ||||||||    
T  10653584 acaattgtact 10653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 41892084 - 41892178
Alignment:
Q  115 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataa 210  Q
    |||||||||||||| |||||||| ||| || || |||| |||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||    
T  41892084 tagtgaataaacca-agttagttgataggtgaagtatgattagttggttggttaggtagttgggagttagttatactaactcacccctataaataa 41892178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 9476 - 9582
Alignment:
Q  119 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 218  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||      
T  9476 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcact 9574  T
Q  219 attgtact 226  Q
    ||||||||    
T  9575 attgtact 9582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 11098 - 11204
Alignment:
Q  119 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 218  Q
    ||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  11098 gaataaaccatagttagttgagatataaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcact 11196  T
Q  219 attgtact 226  Q
    ||||||||    
T  11197 attgtact 11204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 9804 - 9910
Alignment:
Q  119 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 218  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||      
T  9804 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcact 9902  T
Q  219 attgtact 226  Q
    ||||||||    
T  9903 attgtact 9910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 28412 - 28492
Alignment:
Q  118 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcac 198  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||    
T  28412 tgaataaaccatagttagttgataggtaaactatggttagttggttggttatacagttaagagttagttagattaactcac 28492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University