View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6126_low_8 (Length: 247)
Name: NF6126_low_8
Description: NF6126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6126_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 21537606 - 21537840
Alignment:
| Q |
1 |
ttatgctacgcctttcttaaaatgtaagaagcttagtactttagtcgtcgacgattgcaaagtaagtggagatgacaaaatacttgttatatctggtgat |
100 |
Q |
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| T |
21537606 |
ttatgctatgcctttcttaaaatgtaagaagcttagtactttagtcgtcgacgattgcaaagtaagtggagatgacaaaatacttgttatatccggtgat |
21537705 |
T |
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| Q |
101 |
acactttctagtctaacaattatgtatcaacattcaagagttcagatatctgctgcatatgtgaggtcattcagttttaagggtgcatttaagggttata |
200 |
Q |
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| T |
21537706 |
atactttctagtctaacaattatgtatcaacattcaagagttcagatatctgctccatatgtgaggtcattcagttttaagggtgcgtttaagggttata |
21537805 |
T |
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| Q |
201 |
ttaatcatcatcaagtctttgagcacaacatggat |
235 |
Q |
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| T |
21537806 |
ttaatcatcatcaagtctttgagcacaacatggat |
21537840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 21521885 - 21522013
Alignment:
| Q |
1 |
ttatgctacgcctttcttaaaatgtaagaagcttagtactttagtcgtcgacgattgcaaagtaagtggagatgacaaaatacttgttatatctggtgat |
100 |
Q |
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| T |
21521885 |
ttatgctacgcctttcttaaaatgtaagaagcttagtactttagtcatcgacgattgcaaagtaattggagatgacaaaatacttgttatatctggtgat |
21521984 |
T |
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| Q |
101 |
acactttctagtctaacaattatgtatca |
129 |
Q |
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| T |
21521985 |
acattttccagtctaacaatcatgtatca |
21522013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 20426448 - 20426330
Alignment:
| Q |
4 |
tgctacgcctttcttaaaatgtaagaagcttagtactttagtcgtcgacgattgcaaagtaagtggagatgacaaaatacttgttatatctggtgataca |
103 |
Q |
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| T |
20426448 |
tgctaagcctttcttaaaatgtaagaagtttagtactttattcattgagaatttcaaattaatcagagatgacaaaattctttgtatatctggtgataga |
20426349 |
T |
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| Q |
104 |
ctttctagtctaacaatta |
122 |
Q |
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| T |
20426348 |
ctttctagcctaactatta |
20426330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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