View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6126_low_9 (Length: 239)

Name: NF6126_low_9
Description: NF6126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6126_low_9
NF6126_low_9
[»] chr3 (9 HSPs)
chr3 (84-224)||(35389063-35389203)
chr3 (34-160)||(39984047-39984173)
chr3 (176-224)||(25184583-25184631)
chr3 (95-160)||(2386598-2386663)
chr3 (176-224)||(40976668-40976716)
chr3 (176-224)||(592387-592435)
chr3 (176-224)||(45826402-45826450)
chr3 (176-224)||(48637817-48637865)
chr3 (181-217)||(51273613-51273649)
[»] chr1 (6 HSPs)
chr1 (72-224)||(10583708-10583860)
chr1 (72-224)||(49123064-49123216)
chr1 (173-224)||(11359625-11359676)
chr1 (176-224)||(5721698-5721746)
chr1 (176-224)||(8788812-8788860)
chr1 (104-160)||(23541320-23541376)
[»] chr6 (1 HSPs)
chr6 (38-224)||(18132041-18132227)
[»] scaffold0227 (2 HSPs)
scaffold0227 (72-224)||(12027-12179)
scaffold0227 (181-217)||(10980-11016)
[»] chr7 (4 HSPs)
chr7 (72-224)||(6082210-6082362)
chr7 (34-160)||(13078311-13078437)
chr7 (176-224)||(17166137-17166185)
chr7 (181-217)||(27021157-27021193)
[»] chr5 (8 HSPs)
chr5 (38-224)||(29526303-29526489)
chr5 (173-224)||(41108820-41108871)
chr5 (32-154)||(39701943-39702065)
chr5 (173-224)||(18690879-18690930)
chr5 (176-224)||(33215368-33215416)
chr5 (181-224)||(41051202-41051245)
chr5 (181-217)||(39701852-39701888)
chr5 (181-217)||(39703082-39703118)
[»] scaffold0026 (2 HSPs)
scaffold0026 (95-224)||(80522-80651)
scaffold0026 (176-217)||(79407-79448)
[»] chr2 (5 HSPs)
chr2 (34-160)||(14685337-14685463)
chr2 (34-160)||(40422161-40422287)
chr2 (34-160)||(21307193-21307315)
chr2 (176-224)||(39814378-39814426)
chr2 (178-224)||(12324741-12324787)
[»] chr4 (5 HSPs)
chr4 (34-159)||(54641251-54641376)
chr4 (34-160)||(54938073-54938198)
chr4 (176-215)||(25542605-25542644)
chr4 (176-224)||(45638945-45638993)
chr4 (34-136)||(54641614-54641716)
[»] chr8 (1 HSPs)
chr8 (176-224)||(36241372-36241420)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 35389063 - 35389203
Alignment:
Q  84 tgtcactctacttcaagttatgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtagtgatagatata 183  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||       |||| || ||||||||    
T  35389063 tgtcactctacttcaagttatgggatcctggtggacacttatgttatccttcaacttgaggacaaggtgaatctttagggggggagtattgttagatata 35389162  T
Q  184 ggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  35389163 ggactcctaagtgcataagttataaaatattagttgtttat 35389203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 39984173 - 39984047
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    |||||| || ||||||| ||||||| |||| |||| | |||||  || ||||||| | ||||||||||||||||| || || |||||||| || ||||||    
T  39984173 aaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcct 39984074  T
Q  134 tcaccttgaggacaaggtgaatcttta 160  Q
    |||||||||||||||||||||||||||    
T  39984073 tcaccttgaggacaaggtgaatcttta 39984047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 25184583 - 25184631
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25184583 tagatataggactcgtaagggcataagttatagaatattagttgtttat 25184631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 2386663 - 2386598
Alignment:
Q  95 ttcaagttatgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatcttta 160  Q
    ||||| ||||||||  |||| |||||||| || |||||||||||||||||||||||||||||||||    
T  2386663 ttcaacttatgggactctggtggacacttatgctatccttcaccttgaggacaaggtgaatcttta 2386598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 40976668 - 40976716
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  40976668 tagatataggactcctaagggcagaagttatagaatactagttgtttat 40976716  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 592387 - 592435
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||||    
T  592387 tagatataggactcctaagggaagaagttatagaatactagttgtttat 592435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 45826450 - 45826402
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  45826450 tagatataggactcctaagggcagaagttatagaacactagttgtttat 45826402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 48637865 - 48637817
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  48637865 tagatataggactcctaagggcagaggttatagaatactagttgtttat 48637817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 51273613 - 51273649
Alignment:
Q  181 ataggactcctaagggcataagttatagaatattagt 217  Q
    |||||||||||||||||| |||||| |||||||||||    
T  51273613 ataggactcctaagggcagaagttacagaatattagt 51273649  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 10583708 - 10583860
Alignment:
Q  72 cacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatctttannnnnnnagta 171  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||       ||||    
T  10583708 cacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagta 10583807  T
Q  172 gtgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
     || |||  ||||||||||||||||||  |||||||||||| |||| ||||||    
T  10583808 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttat 10583860  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 49123064 - 49123216
Alignment:
Q  72 cacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatctttannnnnnnagta 171  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||       ||||    
T  49123064 cacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagta 49123163  T
Q  172 gtgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
     || |||  ||||||||||||||||||  |||||||||||| |||| ||||||    
T  49123164 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttat 49123216  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 11359676 - 11359625
Alignment:
Q  173 tgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11359676 tgatagatataggactcctaagagcataagttatagaatattagttgtttat 11359625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 5721698 - 5721746
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5721698 tagatataggactcctaagggcataagttataaaatattagttgtttat 5721746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 8788860 - 8788812
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||||    
T  8788860 tagatataggactcctaagggaagaagttatagaatactagttgtttat 8788812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 23541376 - 23541320
Alignment:
Q  104 tgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatcttta 160  Q
    ||||| ||||| |||||||| |||||||||| ||||||||||||| |||||||||||    
T  23541376 tgggaccctggtggacacttatgttatcctttaccttgaggacaacgtgaatcttta 23541320  T

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Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 18132227 - 18132041
Alignment:
Q  38 agagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatccttcac 137  Q
    ||||||| |||| || ||||  ||| ||||| | ||||||||| ||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||    
T  18132227 agagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttattttatccttcac 18132128  T
Q  138 cttgaggacaaggtgaatctttannnnnnnagtagtgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||||||       |||| || |||  ||||||||||||||||||  |||||||||||| |||| ||||||    
T  18132127 cttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcctaagggcagcagttatagaataatagtagtttat 18132041  T

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Target: scaffold0227 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 12027 - 12179
Alignment:
Q  72 cacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatctttannnnnnnagta 171  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |       ||||    
T  12027 cacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttaagggggggagta 12126  T
Q  172 gtgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
     || |||  ||||||||||||||||||  |||||||||||| |||| ||||||    
T  12127 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttat 12179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 10980 - 11016
Alignment:
Q  181 ataggactcctaagggcataagttatagaatattagt 217  Q
    ||||||||||||||||||  |||||||||||||||||    
T  10980 ataggactcctaagggcagcagttatagaatattagt 11016  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 6082210 - 6082362
Alignment:
Q  72 cacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatctttannnnnnnagta 171  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||       ||||    
T  6082210 cacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagta 6082309  T
Q  172 gtgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
     || |||  ||||||||||||||||||  |||||| ||||| |||| ||||||    
T  6082310 ttgttagtaataggactcctaagggcagcagttatggaataatagtagtttat 6082362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 13078311 - 13078437
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    |||||| || ||||||| ||||||| |||| |||| | |||||  || ||||||| | ||||||||||||||||| || || |||||||| || ||||||    
T  13078311 aaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcct 13078410  T
Q  134 tcaccttgaggacaaggtgaatcttta 160  Q
    |||||||||||||||||||||||||||    
T  13078411 tcaccttgaggacaaggtgaatcttta 13078437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 17166185 - 17166137
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17166185 tagatataggactcctaaggccataagttatagaatattagttgtttat 17166137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 27021157 - 27021193
Alignment:
Q  181 ataggactcctaagggcataagttatagaatattagt 217  Q
    |||||||||||||||||| |||||||| |||||||||    
T  27021157 ataggactcctaagggcagaagttatataatattagt 27021193  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 29526489 - 29526303
Alignment:
Q  38 agagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatccttcac 137  Q
    ||||||| |||| || ||||  ||| ||||| | ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| ||| |||||||||    
T  29526489 agagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgtcatccttcac 29526390  T
Q  138 cttgaggacaaggtgaatctttannnnnnnagtagtgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||||||       |||| || |||  ||||||||||||||||||  |||||||||||| |||| ||||||    
T  29526389 cttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcctaagggcagcagttatagaataatagtagtttat 29526303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 41108820 - 41108871
Alignment:
Q  173 tgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108820 tgatagatataggactcctaagggcataagttatagaatattagttgtttat 41108871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 39702065 - 39701943
Alignment:
Q  32 caaaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatc 131  Q
    ||||| ||||||| ||||||| ||||  ||| ||| | | ||| ||||| ||||||| | ||||||||||| ||||| ||||| |||||||| | |||||    
T  39702065 caaaatagagtgtttgatccatgcattagttatcaggtttcacgccttgctctgtcattgtacttcaagttttgggaccctggtggacacttatattatc 39701966  T
Q  132 cttcaccttgaggacaaggtgaa 154  Q
    |||||||||||||||||||||||    
T  39701965 cttcaccttgaggacaaggtgaa 39701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 18690879 - 18690930
Alignment:
Q  173 tgatagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18690879 tgatagatataggactcctaagagcataagttatagaatattagttgtttat 18690930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 33215416 - 33215368
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  33215416 tagatataggactcctaaggccataagttttagaatattagttgtttat 33215368  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 41051245 - 41051202
Alignment:
Q  181 ataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||||||||||||   |||||||||||    
T  41051245 ataggactcctaagggcataagttatagaaagctagttgtttat 41051202  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 39701888 - 39701852
Alignment:
Q  181 ataggactcctaagggcataagttatagaatattagt 217  Q
    |||||||||||||||||| |||||| |||||||||||    
T  39701888 ataggactcctaagggcagaagttacagaatattagt 39701852  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 39703118 - 39703082
Alignment:
Q  181 ataggactcctaagggcataagttatagaatattagt 217  Q
    |||||||||||||||||| |||||| |||||||||||    
T  39703118 ataggactcctaagggcagaagttacagaatattagt 39703082  T

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Target: scaffold0026 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 80522 - 80651
Alignment:
Q  95 ttcaagttatgggatcctggaggacacttgtgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtagtgatagatataggactcctaag 194  Q
    |||||||||||||| | ||| |||||||| | || |||||||||||||||||||||||||||||||       |||| || |||||||||||||||||||    
T  80522 ttcaagttatgggaccatggtggacacttatcttgtccttcaccttgaggacaaggtgaatctttagggggggagtattgttagatataggactcctaag 80621  T
Q  195 ggcataagttatagaatattagttgtttat 224  Q
    |||| ||||||||||||| |||||||||||    
T  80622 ggcagaagttatagaatactagttgtttat 80651  T

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Target: scaffold0026; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 79407 - 79448
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagt 217  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  79407 tagatataggactcctaagggcagaagttatagaatactagt 79448  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 14685337 - 14685463
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    |||||| || ||||||| ||||||| |||| |||| | |||||  || ||||||| | ||||||||||||||||| || || |||||||| || ||||||    
T  14685337 aaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcct 14685436  T
Q  134 tcaccttgaggacaaggtgaatcttta 160  Q
    |||||||||||||||||||||||||||    
T  14685437 tcaccttgaggacaaggtgaatcttta 14685463  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 40422161 - 40422287
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    |||||| || ||||||| ||||||| |||| |||| | |||||  || ||||||| | ||||||||||||||||| || || |||||||| || ||||||    
T  40422161 aaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcct 40422260  T
Q  134 tcaccttgaggacaaggtgaatcttta 160  Q
    |||||||||||||||||||||||||||    
T  40422261 tcaccttgaggacaaggtgaatcttta 40422287  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 21307193 - 21307315
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    |||||| || ||||||| ||||||| |||| |||| | |||||  || ||||||| | ||||||||||||||||| || || |||||||| |    ||||    
T  21307193 aaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttat----tcct 21307288  T
Q  134 tcaccttgaggacaaggtgaatcttta 160  Q
    |||||||||||||||||||||||||||    
T  21307289 tcaccttgaggacaaggtgaatcttta 21307315  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 39814378 - 39814426
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39814378 tagatataggactcctaagggcataagttataaaatattagttgtttat 39814426  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 12324741 - 12324787
Alignment:
Q  178 gatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||    
T  12324741 gatataggactcctaagggcagaagttatataatactagttgtttat 12324787  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 54641376 - 54641251
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    ||||||||| ||||||| ||||||| |||| |||| | ||||| |    |||||| | ||||||||||||||||| ||||| |||||||| ||||||||     
T  54641376 aaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattatacttcaagttatgggaccctggtggacacttctgttatccc 54641277  T
Q  134 tcaccttgaggacaaggtgaatcttt 159  Q
    |||||||||||||||||||| |||||    
T  54641276 tcaccttgaggacaaggtgattcttt 54641251  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 54938198 - 54938073
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    ||||||||| |||||||  |||||| |||| |||| | ||||| | | ||||||| | ||||||| ||||||||| || || |||||||| || ||||||    
T  54938198 aaacagagtatatgatcagggcataagtttgcatgattcacacatcgctctgtcattatacttca-gttatgggacccaggtggacacttatgatatcct 54938100  T
Q  134 tcaccttgaggacaaggtgaatcttta 160  Q
    |||||||||||| ||||||||||||||    
T  54938099 tcaccttgaggataaggtgaatcttta 54938073  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 25542644 - 25542605
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatatta 215  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25542644 tagatataggactcctaagggcataagttatagaatatta 25542605  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 45638993 - 45638945
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  45638993 tagatatatgactcctaagggcagaagttatagaatactagttgtttat 45638945  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 54641716 - 54641614
Alignment:
Q  34 aaacagagtgtatgatccaggcatatgttttcatgctccacaccttgatctgtcactctacttcaagttatgggatcctggaggacacttgtgttatcct 133  Q
    ||||||||| ||||||| ||||||| |||| |||| | ||||  | | ||| ||| | ||||||||||||||||| ||||| |||||||| |||||| ||    
T  54641716 aaacagagtatatgatcaaggcataagtttgcatgattcacatatcgctctatcattatacttcaagttatgggaccctggtggacacttttgttatact 54641617  T
Q  134 tca 136  Q
    |||    
T  54641616 tca 54641614  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 36241420 - 36241372
Alignment:
Q  176 tagatataggactcctaagggcataagttatagaatattagttgtttat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36241420 tagatataggactcctaagggcataagttatagaatattagttgtttat 36241372  T

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