View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6127_high_2 (Length: 335)
Name: NF6127_high_2
Description: NF6127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6127_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 24489065 - 24488787
Alignment:
| Q |
5 |
ccattgattccacaatatttttgccgagatccagtatgcgtgagtcgagtttcaacctcttcaatgatggaaaataaattgaagaatgttgaaaattgat |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24489065 |
ccattgaatccacaatatttttgccgagatccagtatgcgtgagtcgagtttcaacctcttcaatgatggaaaataaattgaagaatgttgaaagttgat |
24488966 |
T |
|
| Q |
105 |
atggactgaaccaacaagactgcagtgtttcaaaagacagtgtacgttacaagttaaaaatatatagagaagaagatgaatcatgaaagtgagctttgac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24488965 |
atggactgaaccaacaagactgcagtgtttcaaaagacagtgtacattacaagttaaaaatatatagagaagaagatgaatcatgaaagtgagctttgac |
24488866 |
T |
|
| Q |
205 |
aattttgtttccaccattaaaacataaaaatattggcaatttaattggattaaaaatgattttgaaacagaaatatata |
283 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24488865 |
aattttgttcccaccattaaaacataaaaatatttgcaatttaattggattaaaaatgattttgaaacacaaatatata |
24488787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 24483142 - 24483081
Alignment:
| Q |
275 |
aaatatatatttgtccatc-tagcatgcattgaaaataagttacctgagggaaacaagattt |
335 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24483142 |
aaatatatatttgtccatcatagcatgcattgaaaataagttacctgagggaaacaagattt |
24483081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 25031773 - 25031853
Alignment:
| Q |
50 |
cgagtttcaacctcttcaatgatggaaaataaattgaagaatgttgaaaattgatatggactgaaccaacaagactgcagt |
130 |
Q |
| |
|
||||||||||| ||||||||||||||| || |||||||||| ||||||| | ||||| | || ||||||||||||||||| |
|
|
| T |
25031773 |
cgagtttcaacatcttcaatgatggaagatgaattgaagaaggttgaaacattatatgaattgcaccaacaagactgcagt |
25031853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 20506529 - 20506433
Alignment:
| Q |
49 |
tcgagtttcaacctcttcaatgatggaaaataaattgaagaatgttgaaaattgatatggactgaaccaacaagactgcagtgtt-tcaaaagacag |
144 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||| ||| | |||| ||||||| || | ||||| |||||| ||||||||| |||| ||||||||||| |
|
|
| T |
20506529 |
tcgactttcaacatctttaatgatggaaaatgaatcgcagaaggttgaaattttaaatggatcaaaccaaaaagactgcaatgttgtcaaaagacag |
20506433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University