View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6127_low_1 (Length: 437)
Name: NF6127_low_1
Description: NF6127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6127_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 5 - 424
Target Start/End: Complemental strand, 178706 - 178292
Alignment:
| Q |
5 |
gagagagaagaaagccacatataacattgtggttggttaatgtcacccaagtgctacccctccaatcctttaagacttccatcataatagttgaaatgtc |
104 |
Q |
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| T |
178706 |
gagagagaagaaagccacatgtgacattgtggttgatcaatgtcacccaagtgttacccctccaatcctttaagacttccatcatactagttgaaatgtc |
178607 |
T |
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| Q |
105 |
taatattaagtaataaatatttttaagagtgaaaatatgagattttaggtcagatcaataaatttggtcatatgaaaatcggtttcatagtcatacaata |
204 |
Q |
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| T |
178606 |
taatattaagtaataaatatttttaagagtgaaaatatgagattttaggtcagatcaataaatttggtcatatgaaaatcggtttcatggtcatacaata |
178507 |
T |
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| Q |
205 |
attttattttaaaattnnnnnnnnnnnnngtaagaattacgtaccc-nnnnnnnnnngaagtaagaattaaggatttattagaataagaatattaaatgt |
303 |
Q |
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| T |
178506 |
attttattttaaaat------aaaaaaaagtaagaattacttacccaaaaaaaaaaaaaagtaagaattaaggatttattagaataagaatattaaatgt |
178413 |
T |
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| Q |
304 |
gttttaatttcaaccaatacttaatactactactatagtttaatctaaaggataatagttctcatctcataaccaagtaattaagtttaacaaactttaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
178412 |
gttttaatttcaaccaatacttaatactactactatagtttaatctaaaggataatagttctcatctcataaccaagtaattaagtttaacaaattttaa |
178313 |
T |
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| Q |
404 |
ggtgaaattaagggttaatat |
424 |
Q |
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| T |
178312 |
ggtgaaattaagggttaatat |
178292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 9712940 - 9712996
Alignment:
| Q |
7 |
gagagaagaaagccacatataacattgtggttggttaatgtcacccaagtgctaccc |
63 |
Q |
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| T |
9712940 |
gagagaagaaagccacttgtgacattgtggttggtcaatgtcacccaagtgctaccc |
9712996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 6607486 - 6607539
Alignment:
| Q |
10 |
agaagaaagccacatataacattgtggttggttaatgtcacccaagtgctaccc |
63 |
Q |
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| T |
6607486 |
agaagaaagccacatgtgacattatggttggtcaatgtcacccaagtgctaccc |
6607539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 43465153 - 43465102
Alignment:
| Q |
10 |
agaagaaagccacatataacattgtggttggttaatgtcacccaagtgctac |
61 |
Q |
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| T |
43465153 |
agaagaaagccacatgtgatattgtggttggccaatgtcacccaagtgctac |
43465102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 6980943 - 6980988
Alignment:
| Q |
5 |
gagagagaagaaagccacatataacattgtggttggttaatgtcac |
50 |
Q |
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| T |
6980943 |
gagagagaagaaagccacttgtaacattgtggttggccaatgtcac |
6980988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 43303835 - 43303803
Alignment:
| Q |
28 |
acattgtggttggttaatgtcacccaagtgcta |
60 |
Q |
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| T |
43303835 |
acattgtggttggtcaatgtcacccaagtgcta |
43303803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 28810022 - 28809974
Alignment:
| Q |
15 |
aaagccacatataacattgtggttggttaatgtcacccaagtgctaccc |
63 |
Q |
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| T |
28810022 |
aaagccacttgtaacattgtggttagtcaatgtcacccaaatgctaccc |
28809974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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