View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6127_low_3 (Length: 327)

Name: NF6127_low_3
Description: NF6127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6127_low_3
NF6127_low_3
[»] chr3 (21 HSPs)
chr3 (78-162)||(29359914-29359998)
chr3 (230-298)||(29360068-29360136)
chr3 (78-162)||(22976592-22976676)
chr3 (81-162)||(39674364-39674446)
chr3 (81-162)||(42864455-42864537)
chr3 (230-291)||(22976438-22976499)
chr3 (91-162)||(4533665-4533737)
chr3 (81-162)||(959020-959102)
chr3 (92-162)||(25041534-25041606)
chr3 (91-162)||(39580088-39580160)
chr3 (236-291)||(25041680-25041735)
chr3 (236-291)||(39580234-39580289)
chr3 (236-291)||(21869195-21869250)
chr3 (81-162)||(53330500-53330584)
chr3 (81-162)||(53334184-53334268)
chr3 (81-162)||(53337861-53337945)
chr3 (2-43)||(29359832-29359873)
chr3 (236-291)||(959176-959231)
chr3 (236-291)||(4533811-4533866)
chr3 (249-290)||(41530371-41530412)
chr3 (93-130)||(51362744-51362781)
[»] chr1 (5 HSPs)
chr1 (93-162)||(33368975-33369044)
chr1 (224-291)||(33369127-33369193)
chr1 (237-291)||(46397778-46397832)
chr1 (2-43)||(22150622-22150663)
chr1 (81-148)||(46397919-46397985)
[»] chr5 (11 HSPs)
chr5 (78-158)||(6665854-6665935)
chr5 (78-162)||(32659066-32659151)
chr5 (81-162)||(8871429-8871511)
chr5 (81-162)||(36606360-36606442)
chr5 (230-291)||(6666032-6666093)
chr5 (236-291)||(8871585-8871640)
chr5 (97-148)||(30131348-30131399)
chr5 (224-291)||(32659237-32659306)
chr5 (81-154)||(13854511-13854586)
chr5 (244-291)||(13854375-13854422)
chr5 (235-291)||(36606478-36606534)
[»] chr7 (20 HSPs)
chr7 (224-295)||(22293192-22293263)
chr7 (81-162)||(30947745-30947827)
chr7 (81-154)||(37243017-37243091)
chr7 (230-291)||(22205004-22205065)
chr7 (78-162)||(22205142-22205227)
chr7 (78-162)||(22229512-22229597)
chr7 (230-291)||(22229674-22229735)
chr7 (253-295)||(45281169-45281211)
chr7 (239-291)||(25443942-25443994)
chr7 (78-159)||(45280929-45281012)
chr7 (81-162)||(25443783-25443865)
chr7 (237-290)||(26244664-26244717)
chr7 (238-291)||(30947902-30947955)
chr7 (236-287)||(19927939-19927990)
chr7 (81-162)||(19928064-19928144)
chr7 (236-291)||(26279626-26279681)
chr7 (230-269)||(45281109-45281148)
chr7 (118-159)||(22293061-22293103)
chr7 (2-43)||(22205248-22205289)
chr7 (2-43)||(22229450-22229491)
[»] chr8 (16 HSPs)
chr8 (91-158)||(3046611-3046679)
chr8 (91-162)||(17068370-17068442)
chr8 (91-162)||(17579831-17579903)
chr8 (236-291)||(10861489-10861544)
chr8 (91-154)||(29054757-29054820)
chr8 (93-162)||(17630973-17631043)
chr8 (81-162)||(20289525-20289607)
chr8 (81-162)||(21076155-21076237)
chr8 (91-162)||(10861595-10861667)
chr8 (236-291)||(17068516-17068571)
chr8 (236-291)||(17579702-17579757)
chr8 (236-291)||(34964430-34964485)
chr8 (230-291)||(3046453-3046514)
chr8 (236-292)||(17630843-17630899)
chr8 (236-291)||(29054904-29054959)
chr8 (2-43)||(3046729-3046770)
[»] chr6 (4 HSPs)
chr6 (81-162)||(21112273-21112355)
chr6 (91-162)||(8862225-8862297)
chr6 (236-291)||(21112429-21112484)
chr6 (235-291)||(8862370-8862426)
[»] chr4 (4 HSPs)
chr4 (236-291)||(54260466-54260521)
chr4 (81-162)||(54260310-54260392)
chr4 (224-267)||(26261507-26261550)
chr4 (94-148)||(26261233-26261286)
[»] scaffold0017 (2 HSPs)
scaffold0017 (81-162)||(37861-37943)
scaffold0017 (236-291)||(37732-37787)
[»] chr2 (6 HSPs)
chr2 (92-160)||(14314206-14314275)
chr2 (236-291)||(14314069-14314124)
chr2 (237-291)||(14811618-14811672)
chr2 (226-290)||(13043510-13043574)
chr2 (91-148)||(29081111-29081169)
chr2 (82-162)||(14811462-14811543)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 29359914 - 29359998
Alignment:
Q  78 ctacaagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29359914 ctacaagtctgatagcgctatcaaaaacatattgtctcttctaacccaaaaaatagtgtttctcgtcaccatatagcgatagcta 29359998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 29360068 - 29360136
Alignment:
Q  230 aaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaatgtgatc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29360068 aaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagataaatgtgatc 29360136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 22976676 - 22976592
Alignment:
Q  78 ctacaagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||   |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  22976676 ctacaagtctagcagcgctatcaaaaacatattgtctcttttaacccaaaaaatagggtttctcgtcaccacatagcgatagcta 22976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 39674364 - 39674446
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||| |||||||    
T  39674364 caagtctgacagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 39674446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 42864455 - 42864537
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||| |||||||    
T  42864455 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 42864537  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 22976499 - 22976438
Alignment:
Q  230 aaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  22976499 aaaaaactgtttattttcgatataaattagtgttaactattaagtagtcaacattagacaaa 22976438  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 4533665 - 4533737
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacccaaaa-aatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||| | |||||||    
T  4533665 agcgctatcaaaatcatattatctcttctaacctaaaataatagggtttctcgtcaccacataacaatagcta 4533737  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 959020 - 959102
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||  |||||||    
T  959020 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagaaatagcta 959102  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 25041534 - 25041606
Alignment:
Q  92 gcgctatcaaaaacatattatctcttctaacccaaaa--aatagggtttctcgtcaccatatagcgatagcta 162  Q
    |||||||||||| |||||| |||||||||||| ||||  |||||||||||||||||||| ||||| |||||||    
T  25041534 gcgctatcaaaatcatattgtctcttctaacctaaaaaaaatagggtttctcgtcaccacatagcaatagcta 25041606  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 39580088 - 39580160
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacccaaaa-aatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||||| |||| | |||||||||||| |||| |||||||||||||||||||| ||||| |||||||    
T  39580088 agcgctatcaaaatcataatgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 39580160  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 25041680 - 25041735
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  25041680 ctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 25041735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 39580234 - 39580289
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  39580234 ctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 39580289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 21869195 - 21869250
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||| || |||||||||||||||| | ||| |||||||||||||||||    
T  21869195 ctgtttgttttcaatataaattagtgttaactgttaagtagtcaacattagacaaa 21869250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 53330584 - 53330500
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaac---ccaaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||| ||||| |||||| |||||||||||     |||||||||||||||||||||||| ||||| |||||||    
T  53330584 caagtctggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagcta 53330500  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 53334268 - 53334184
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaac---ccaaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||| ||||| |||||| |||||||||||     |||||||||||||||||||||||| ||||| |||||||    
T  53334268 caagtctggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagcta 53334184  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 53337945 - 53337861
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaac---ccaaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||| ||||| |||||| |||||||||||     |||||||||||||||||||||||| ||||| |||||||    
T  53337945 caagtctggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagcta 53337861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 29359832 - 29359873
Alignment:
Q  2 ttatactccgacgccgatacttctgacttacatatttccttt 43  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  29359832 ttatactccgacaccgatacttctgacttacatattttcttt 29359873  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 959176 - 959231
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||| ||||  | ||| |||||||||||||||||    
T  959176 ctgtttgttttcgatataaattagtgataaccgttaagtagtcaacattagacaaa 959231  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 4533811 - 4533866
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| ||||||| |||||||| | ||  |||||||||||||||||    
T  4533811 ctgtttgttttcgatataaattattgttaactgttaattagtcaacattagacaaa 4533866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 41530412 - 41530371
Alignment:
Q  249 atctaaattagtgttaactatcaagcagtcaacattagacaa 290  Q
    |||| |||||||||||||||| ||| ||||||||||||||||    
T  41530412 atctcaattagtgttaactataaagtagtcaacattagacaa 41530371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 51362781 - 51362744
Alignment:
Q  93 cgctatcaaaaacatattatctcttctaacccaaaaaa 130  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  51362781 cgctatcaaaaacaaattgtctcttctaacccaaaaaa 51362744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 33368975 - 33369044
Alignment:
Q  93 cgctatcaaaaacatattatctcttctaacccaaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  33368975 cgctatcaaaaacatattatctcttctaacccaaaaaattgggtttctcgtcaccacatagcgatagcta 33369044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 33369127 - 33369193
Alignment:
Q  224 attgggaaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||| || || ||||| ||||||| ||||||||||||| ||| |||||||||||||||||    
T  33369127 attgggaaaaaattgatt-ttttcaatctaaaatagtgttaactattaagtagtcaacattagacaaa 33369193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 46397832 - 46397778
Alignment:
Q  237 tgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||||| ||||||| |||||||||| ||| | |||||||||||||||    
T  46397832 tgtttgttttcgatataaattattgttaactattaagtaatcaacattagacaaa 46397778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 22150663 - 22150622
Alignment:
Q  2 ttatactccgacgccgatacttctgacttacatatttccttt 43  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  22150663 ttatactccgacaccgatacttctgtcttacatatttccttt 22150622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 46397985 - 46397919
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaa-tagggtttctcgtcacca 148  Q
    ||||||||| ||||||||||||| |||| |  || |||||||| |||||| ||||||||||||||||||    
T  46397985 caagtctgacagcgctatcaaaatcatagt--cttttctaacctaaaaaaatagggtttctcgtcacca 46397919  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 6665854 - 6665935
Alignment:
Q  78 ctacaagtctgatagcgctatcaaaaacatattatctcttctaaccc-aaaaaatagggtttctcgtcaccatatagcgata 158  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  6665854 ctacaagtctggcagcgctatcaaaaacatattgtctcttctaacccaaaaaaatagggtttctcgtcaccacatagcgata 6665935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 32659066 - 32659151
Alignment:
Q  78 ctacaagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaa-atagggtttctcgtcaccatatagcgatagcta 162  Q
    |||||||||||  | |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  32659066 ctacaagtctggcaacgctatcaaaaacatattgtctcttctaaccccaaaatatagggtttctcgtcaccacatagcgatagcta 32659151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 8871429 - 8871511
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||| |||||||    
T  8871429 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 8871511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 36606360 - 36606442
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||| |||||||    
T  36606360 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 36606442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 6666032 - 6666093
Alignment:
Q  230 aaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||||||||| |||||||||||||||||  ||| |||||||||||||||||    
T  6666032 aaaaaactgtttgttttcgatataaattagtgttaactagtaagtagtcaacattagacaaa 6666093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 8871585 - 8871640
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  8871585 ctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 8871640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 30131399 - 30131348
Alignment:
Q  97 atcaaaaacatattatctcttctaacccaaaaaatagggtttctcgtcacca 148  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  30131399 atcaaaaacatattgcctcttctaacctaaaaaatagggtttctcgtcacca 30131348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 32659237 - 32659306
Alignment:
Q  224 attgggaaaaaactgtttgttttcg--atctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||| |||||||||||    ||||||||||||||||||||| ||| |||||||||||||||||    
T  32659237 attgggaaaaagctgtttgttttttttatctaaattagtgttaactattaagtagtcaacattagacaaa 32659306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 13854586 - 13854511
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaa--tagggtttctcgtcaccatatagc 154  Q
    ||||||||  ||||||||||||| |||||| ||||| |||||| ||||||  |||||||||||||||||| |||||    
T  13854586 caagtctggcagcgctatcaaaatcatattgtctctcctaacctaaaaaaaatagggtttctcgtcaccacatagc 13854511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 13854422 - 13854375
Alignment:
Q  244 tttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  13854422 tttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 13854375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 36606478 - 36606534
Alignment:
Q  235 actgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||  || ||||||||| |||||| | ||| |||||||||||||||||    
T  36606478 actgtttgtttttaatataaattagtattaactgttaagtagtcaacattagacaaa 36606534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 22293192 - 22293263
Alignment:
Q  224 attgggaaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaatgtg 295  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  22293192 attgggaaaaaattgtttgtttttgatctaaattagtgttaactattaagtagtcaacattagacaaatgtg 22293263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 30947745 - 30947827
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaa-aatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| |||||||||| | |||| |||||||||||||||||||| ||||| |||||||    
T  30947745 caagtctggcagcgctatcaaaatcatattgtctcttctaatctaaaaaaatagggtttctcgtcaccacatagcaatagcta 30947827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 37243091 - 37243017
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagc 154  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| |||||    
T  37243091 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagc 37243017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 22205065 - 22205004
Alignment:
Q  230 aaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||| |||||||| |||||||||||||||||| | | |||||||||||||||||    
T  22205065 aaaaaactgtttcttttcgatataaattagtgttaactattaggtagtcaacattagacaaa 22205004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 22205227 - 22205142
Alignment:
Q  78 ctacaagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaa-tagggtttctcgtcaccatatagcgatagcta 162  Q
    |||| ||||||  ||| |||| |||||||| || ||||||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  22205227 ctaccagtctgccagcactataaaaaacattttgtctcttctatcccaaaaaaatagggtttctcgtcaccaaatagcgatagcta 22205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22229512 - 22229597
Alignment:
Q  78 ctacaagtctgatagcgctatcaaaaacatattatctcttctaacccaaaa-aatagggtttctcgtcaccatatagcgatagcta 162  Q
    |||| ||||||  ||| |||| |||||||| || ||||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  22229512 ctaccagtctgccagcactataaaaaacattttgtctcttctatcccaaaaaaatagggtttctcgtcaccaaatagcgatagcta 22229597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 22229674 - 22229735
Alignment:
Q  230 aaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||| |||||||| |||||||||||||||||| | | |||||||||||||||||    
T  22229674 aaaaaactgtttcttttcgatataaattagtgttaactattaggtagtcaacattagacaaa 22229735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 45281169 - 45281211
Alignment:
Q  253 aaattagtgttaactatcaagcagtcaacattagacaaatgtg 295  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  45281169 aaattagtgttaactattaagcagtcaacattagacaaatgtg 45281211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 25443942 - 25443994
Alignment:
Q  239 tttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  25443942 tttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 25443994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 45280929 - 45281012
Alignment:
Q  78 ctacaagtctgatagcgctatcaaaaacatattatctcttctaaccc--aaaaaatagggtttctcgtcaccatatagcgatag 159  Q
    |||||||||||   |||| || ||||||||||| |||||||||||||  ||||||||||||||||| |||||| | ||||||||    
T  45280929 ctacaagtctggccgcgcaataaaaaacatattgtctcttctaacccaaaaaaaatagggtttctcatcaccacacagcgatag 45281012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 25443783 - 25443865
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaat-agggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| | |||||||||| ||||||| |||||||||| |||||| ||| | |||||||    
T  25443783 caagtctggcagcgctatcaaaatcatattgtttcttctaacctaaaaaataagggtttctcatcaccacatatcaatagcta 25443865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 26244717 - 26244664
Alignment:
Q  237 tgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaa 290  Q
    ||||||||||| |||| |||||||||||| ||| ||| ||||||||||||||||    
T  26244717 tgtttgttttcaatctcaattagtgttaattattaagtagtcaacattagacaa 26244664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 30947902 - 30947955
Alignment:
Q  238 gtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||| |||||||||||||||| | ||  |||||||||||||||||    
T  30947902 gtttgttttcgatataaattagtgttaactgttaaatagtcaacattagacaaa 30947955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 19927990 - 19927939
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattaga 287  Q
    ||||||||||||||| |||||||||| ||||| | ||| |||||||||||||    
T  19927990 ctgtttgttttcgatataaattagtgataactgttaagtagtcaacattaga 19927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 19928144 - 19928064
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaa-tagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||| |  ||||||||||| |||||| || ||||||||||||||| ||||| |||||||    
T  19928144 caagtctggcagcgctatcaaaatcatagt--ctcttctaacctaaaaaaatatggtttctcgtcaccacatagcaatagcta 19928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 26279681 - 26279626
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| ||||||| |||||||| | ||| |||||||||| ||||||    
T  26279681 ctgtttgttttcgatataaattaatgttaactgttaagtagtcaacattggacaaa 26279626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 45281109 - 45281148
Alignment:
Q  230 aaaaaactgtttgttttcgatctaaattagtgttaactat 269  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  45281109 aaaaaattgtttgttttcgatataaattagtgttaactat 45281148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 22293061 - 22293103
Alignment:
Q  118 ctaacccaaaaaa-tagggtttctcgtcaccatatagcgatag 159  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  22293061 ctaacccaaaaaagtagggtttctcgtcaccatataacgatag 22293103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 22205289 - 22205248
Alignment:
Q  2 ttatactccgacgccgatacttctgacttacatatttccttt 43  Q
    ||||||| |||| |||||||||||| ||||||||||||||||    
T  22205289 ttatacttcgacaccgatacttctgtcttacatatttccttt 22205248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 22229450 - 22229491
Alignment:
Q  2 ttatactccgacgccgatacttctgacttacatatttccttt 43  Q
    ||||||| |||| |||||||||||| ||||||||||||||||    
T  22229450 ttatacttcgacaccgatacttctgtcttacatatttccttt 22229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 3046679 - 3046611
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacccaa-aaaatagggtttctcgtcaccatatagcgata 158  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||    
T  3046679 agcgctatcaaaaacatattgtctcttctaacccaaaaaaatagggtttctcgtcaccacataacgata 3046611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 17068370 - 17068442
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||||    
T  17068370 agcgctatcaaaatcatattatctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 17068442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 17579903 - 17579831
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||||    
T  17579903 agcgctatcaaaatcatattatctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 17579831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 10861544 - 10861489
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  10861544 ctgtttgttttcgatataaattagtgttaactattaagtagtcaacattagacaaa 10861489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 29054757 - 29054820
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacccaaaaaatagggtttctcgtcaccatatagc 154  Q
    |||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  29054757 agcgttatcaaaatcatattgtctcttctaacctaaaaaatagggtttctcgtcaccacatagc 29054820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 17631043 - 17630973
Alignment:
Q  93 cgctatcaaaaacatattatctcttctaacccaaaaaa-tagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||| ||||| |||||||    
T  17631043 cgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccaaatagcaatagcta 17630973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 20289525 - 20289607
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaa-aatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||| |||||||| |||| |||||||||||||||||||| ||||| |||||||    
T  20289525 caagtctggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 20289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 21076155 - 21076237
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaa-aatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||| |||||||| |||| |||||||||||||||||||| ||||| |||||||    
T  21076155 caagtctggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 21076237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 10861667 - 10861595
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacccaaaaa-atagggtttctcgtcaccatatagcgatagcta 162  Q
    |||||| |||||| |||||| |||||||||||| ||||| ||||||||||||||||||| ||||| |||||||    
T  10861667 agcgctctcaaaatcatattctctcttctaacctaaaaatatagggtttctcgtcaccacatagcaatagcta 10861595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 17068516 - 17068571
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  17068516 ctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 17068571  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 17579757 - 17579702
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  17579757 ctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 17579702  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 34964485 - 34964430
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  34964485 ctgtttgttttcgatgtaaattagtgttaactgttaagtagtcaacattagacaaa 34964430  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 3046514 - 3046453
Alignment:
Q  230 aaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||| |||||||||| ||| |||||||||||||| ||| ||| |||||||||||||||||    
T  3046514 aaaaaattgtttgtttttgatataaattagtgttaaatattaagtagtcaacattagacaaa 3046453  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 17630899 - 17630843
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaat 292  Q
    ||||| ||||||||| |||||||||||||||| | ||| ||||||||||||||||||    
T  17630899 ctgttagttttcgatataaattagtgttaactgttaagtagtcaacattagacaaat 17630843  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 29054904 - 29054959
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||  | ||| |||||||||||||||||    
T  29054904 ctgtttgttttcgatataaattagtgttaacggttaagtagtcaacattagacaaa 29054959  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 3046770 - 3046729
Alignment:
Q  2 ttatactccgacgccgatacttctgacttacatatttccttt 43  Q
    |||||||||||| ||||||| |||| ||||||||||||||||    
T  3046770 ttatactccgacaccgatacctctgtcttacatatttccttt 3046729  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 21112273 - 21112355
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||| |||||||    
T  21112273 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 21112355  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 8862225 - 8862297
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||  ||||| |||||||    
T  8862225 agcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccgcatagcaatagcta 8862297  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 21112429 - 21112484
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||| ||| |||||||||||||||| | ||| |||||||||||||||||    
T  21112429 ctgtttgtttttgatataaattagtgttaactgttaagtagtcaacattagacaaa 21112484  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 8862370 - 8862426
Alignment:
Q  235 actgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||||||| |||||||||| ||||| | |||  ||||||||||||||||    
T  8862370 actgtttgttttcgatataaattagtgataactgttaagtggtcaacattagacaaa 8862426  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 54260466 - 54260521
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  54260466 ctgtttgttttcgatataaattagtgttaactattaagtagtcaacattagacaaa 54260521  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 54260310 - 54260392
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacc-caaaaaatagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||  |||||||||| ||||||||||||| ||||| |||||||    
T  54260310 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaataggttttctcgtcaccacatagcaatagcta 54260392  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 26261507 - 26261550
Alignment:
Q  224 attgggaaaaaactgtttgttttcgatctaaattagtgttaact 267  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||    
T  26261507 attgggaaaaaattgtttgttttcaatctcaattagtgttaact 26261550  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 26261233 - 26261286
Alignment:
Q  94 gctatcaaaaacatattatctcttctaacccaaaaaatagggtttctcgtcacca 148  Q
    ||||||||||| | ||| ||||||||||||| |||||||| ||||||||||||||    
T  26261233 gctatcaaaaa-agattgtctcttctaaccccaaaaatagagtttctcgtcacca 26261286  T

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Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 37943 - 37861
Alignment:
Q  81 caagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaa-tagggtttctcgtcaccatatagcgatagcta 162  Q
    ||||||||  ||||||||||||| |||||| |||||| ||||| |||||| |||||||||||||||||| ||||| |||||||    
T  37943 caagtctggcagcgctatcaaaatcatattgtctcttttaacctaaaaaaatagggtttctcgtcaccacatagcaatagcta 37861  T

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Target: scaffold0017; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 37787 - 37732
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||| ||||||||| | ||| |||||||||||||||||    
T  37787 ctgtttgttttcgatataaatttgtgttaactgttaagtagtcaacattagacaaa 37732  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 14314275 - 14314206
Alignment:
Q  92 gcgctatcaaaaacatattatctcttctaacccaaaaaa-tagggtttctcgtcaccatatagcgatagc 160  Q
    |||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||| ||||| |||||    
T  14314275 gcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagc 14314206  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 14314124 - 14314069
Alignment:
Q  236 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    ||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  14314124 ctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 14314069  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 14811618 - 14811672
Alignment:
Q  237 tgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaaa 291  Q
    |||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  14811618 tgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaa 14811672  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 13043574 - 13043510
Alignment:
Q  226 tgggaaaaaactgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagacaa 290  Q
    |||||||||| ||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||    
T  13043574 tgggaaaaaattgtttgttttcaatctcaattagtgttaagtattaagtggtcaacattagacaa 13043510  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 29081111 - 29081169
Alignment:
Q  91 agcgctatcaaaaacatattatctcttctaa-cccaaaaaatagggtttctcgtcacca 148  Q
    |||||||| ||||||||||| |||||||||| |||| ||||||||||| ||||||||||    
T  29081111 agcgctatgaaaaacatattgtctcttctaatcccagaaaatagggttcctcgtcacca 29081169  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 14811462 - 14811543
Alignment:
Q  82 aagtctgatagcgctatcaaaaacatattatctcttctaacccaaaaaa-tagggtttctcgtcaccatatagcgatagcta 162  Q
    |||||||  ||| |||| |||| |||||| |||||||||||| |||||| |||| ||||||||||||| ||||| |||||||    
T  14811462 aagtctggcagcactattaaaatcatattgtctcttctaacctaaaaaaataggatttctcgtcaccacatagcaatagcta 14811543  T

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