View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6127_low_5 (Length: 209)
Name: NF6127_low_5
Description: NF6127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6127_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 1716485 - 1716666
Alignment:
| Q |
11 |
gtgagaagaactattaagttttgaaataacctaaattaaacagtct-gagtttcggctagatgtgggaaataaggtgaatttatttgtatttgctaatgt |
109 |
Q |
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| T |
1716485 |
gtgagtagaactat-aagttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgt |
1716583 |
T |
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| Q |
110 |
attgaaatacagtcattttgatgagcatggcaatcaagccaaatgggtggaagatgtcaatgatacactactagatctacata |
192 |
Q |
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| T |
1716584 |
attgaaatagagtcgttttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacata |
1716666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 1738009 - 1738046
Alignment:
| Q |
141 |
aatcaagccaaatgggtggaagatgtcaatgatacact |
178 |
Q |
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| T |
1738009 |
aatcaagccaaatgggtggaagatgtcaatggtacact |
1738046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 1737981 - 1738009
Alignment:
| Q |
17 |
agaactattaagttttgaaataacctaaa |
45 |
Q |
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| T |
1737981 |
agaactattaagttttgaaataacctaaa |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 33577656 - 33577697
Alignment:
| Q |
73 |
tgggaaataaggtgaatttatttgtatttgctaatgtattga |
114 |
Q |
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| T |
33577656 |
tgggaaataaggtgattttagttttatttgctaatgtattga |
33577697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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