View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6128_high_6 (Length: 276)
Name: NF6128_high_6
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6128_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 49865247 - 49865511
Alignment:
| Q |
1 |
ttggtgctttgcggccccggctgagttctcgaatccgacgttcaaggcggtgaaatgggcagagttcacacctgccaattaataacaactcgataaacac |
100 |
Q |
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| T |
49865247 |
ttggtgctttgcggcaccggctgagttctcaaatccgacgttcaaggcggtgaaatgggcagagttcacacctgccaattaataacaacccgatatacac |
49865346 |
T |
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| Q |
101 |
aacttacaattttttagagatccatattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacaccatcagcata |
200 |
Q |
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| T |
49865347 |
aacttacaattttttagagatccatattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacaccatcagcata |
49865446 |
T |
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| Q |
201 |
gcttttgctgccggtaaatatggtctttgtgggaccatcgccaataatagtaacatgatccctat |
265 |
Q |
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| T |
49865447 |
gcttttgctgccagtaaatatggtctttgtgggaccatcgccaataatagtaacatggtccctat |
49865511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 49871188 - 49871443
Alignment:
| Q |
5 |
tgctttgcggccccggctgagttctcgaatccgacgttcaaggcggtgaaatgggcagagttcacacctgccaattaataacaactcgataaacacaact |
104 |
Q |
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| T |
49871188 |
tgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaattaataacaaatcgatcattacaact |
49871287 |
T |
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| Q |
105 |
tacaattttttag-agatcc---atattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacaccatcagcata |
200 |
Q |
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| T |
49871288 |
tacaacttaggaacagatgctaaatattaatcattgcatta----------gtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccata |
49871377 |
T |
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| Q |
201 |
gcttttgctgccggtaaatatggtctttgtgggaccatcgccaataatagtaacatgatccctatg |
266 |
Q |
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| T |
49871378 |
gcttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctatg |
49871443 |
T |
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