View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6128_high_7 (Length: 264)
Name: NF6128_high_7
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6128_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 38584177 - 38584109
Alignment:
| Q |
44 |
gacaatcatcaaaattacgaaataaccaaccatatgaatctgaatgaacagtgacccacatgaagaagt |
112 |
Q |
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| T |
38584177 |
gacaatcatcaaaattacgaaataaccaaccatatgaatctgaatgaacagtgacccacatgaagaagt |
38584109 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 38584045 - 38583978
Alignment:
| Q |
176 |
tatagatcgaagagcttacacgtgtgaagacattcagatatagttgtaggttgtttgaacaaattgtt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38584045 |
tatagatcgaagagcttacacgtgtgaagacattcagatatagttgtaggttgtttgaacaaattgtt |
38583978 |
T |
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