View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6128_high_8 (Length: 242)
Name: NF6128_high_8
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6128_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 40678235 - 40678465
Alignment:
| Q |
12 |
atcatcagaggaagtatagacagttctacaacagatggtggtagatcaggattcttcaattcaatcacactaaaaccaggtgatttttgtggtgaagaat |
111 |
Q |
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| T |
40678235 |
atcatcagaggaagtatagacagttctacaacagatggtggtagatcaggattcttcaattcaatcacactaaaaccaggtgatttttgtggtgaagaat |
40678334 |
T |
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| Q |
112 |
tactaacatgggctttaatgccagcatctagtctaaaccttccatcatctacaagaactgttaagacactaagtgaagtagaagcatttgcgcttagagc |
211 |
Q |
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| T |
40678335 |
tgctaacatgggctttaatgccagcatctagtctaaaccttccatcatctacaagaactgttaagacactaagtgaagtagaagcatttgcacttagagc |
40678434 |
T |
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| Q |
212 |
agaagatctcaaatttgtgtcaagccagttt |
242 |
Q |
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| T |
40678435 |
agaagatctcaaatttgtgtcaagccagttt |
40678465 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 13112495 - 13112404
Alignment:
| Q |
33 |
agttctacaacagatggtggtagatcaggattcttcaattcaatcacactaaaaccaggtgatttttgtggtgaagaattactaacatgggc |
124 |
Q |
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| T |
13112495 |
agttctacaacaaatggaggaaggtatggattcttcaattcaatcacactaaggccaggagacttttgtggagaagaattgttaacatgggc |
13112404 |
T |
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