View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6128_low_10 (Length: 239)
Name: NF6128_low_10
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6128_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 512157 - 512384
Alignment:
| Q |
1 |
ttcttgattgttgaatcaccattggactaaaggtccatagatccttagataacgactttcactaaatagttctttagcaatttaatccactgaagctgga |
100 |
Q |
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| T |
512157 |
ttcttgattgttgaatcaccattggactataggtccatagatccttagataacgactttcactaaatagttctttagcaatttaatccactaaagctgga |
512256 |
T |
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| Q |
101 |
tattatctttcgtgttttatgtaaaagtgtaaaatttgttgtgtttaagctttacatttgaaatacggttaaatcaaatcaatttctcaaccccgcatcg |
200 |
Q |
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| T |
512257 |
tattatctttcgtgttttatgtaaaagtgtaaaatgtgttgtgtctaagctttacatttgaaatacggttaaatcaaatcaatttctcatccccgcatcg |
512356 |
T |
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| Q |
201 |
ctttgtgaagaacttgaacagatgatga |
228 |
Q |
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| T |
512357 |
ctttgtgaagaacttgaacggatgatga |
512384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 557352 - 557281
Alignment:
| Q |
35 |
ccatagatccttagataacgactttcactaaatagttctttagcaatttaatccactgaagctggatattat |
106 |
Q |
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| T |
557352 |
ccataggtccttagataaggactttcactaaatagttctttagcaatttaatccactaaagctagatattat |
557281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 31800972 - 31801017
Alignment:
| Q |
183 |
tttctcaaccccgcatcgctttgtgaagaacttgaacagatgatga |
228 |
Q |
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| T |
31800972 |
tttctcatccccgcatcgctttgtgaagaacttgagcggatgatga |
31801017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 46598288 - 46598333
Alignment:
| Q |
183 |
tttctcaaccccgcatcgctttgtgaagaacttgaacagatgatga |
228 |
Q |
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| T |
46598288 |
tttctcatccctgcatcgctttgtgaagaacttgagcggatgatga |
46598333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 557586 - 557550
Alignment:
| Q |
2 |
tcttgattgttgaatcaccattggactaaaggtccat |
38 |
Q |
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| T |
557586 |
tcttgattgttgaatcaccattggactataggcccat |
557550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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