View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6128_low_2 (Length: 964)

Name: NF6128_low_2
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6128_low_2
NF6128_low_2
[»] chr3 (13 HSPs)
chr3 (166-565)||(3744891-3745292)
chr3 (18-290)||(4142718-4142989)
chr3 (18-290)||(4158528-4158799)
chr3 (36-290)||(3753784-3754037)
chr3 (728-922)||(3744654-3744846)
chr3 (916-959)||(3734407-3734450)
chr3 (193-290)||(967869-967966)
chr3 (176-292)||(1931892-1932008)
chr3 (187-292)||(1937714-1937819)
chr3 (176-216)||(988687-988727)
chr3 (191-226)||(803977-804012)
chr3 (178-292)||(2679178-2679292)
chr3 (166-224)||(12132320-12132378)
[»] chr5 (9 HSPs)
chr5 (123-365)||(11081304-11081546)
chr5 (163-292)||(1428479-1428608)
chr5 (166-224)||(23764985-23765043)
chr5 (166-224)||(23814833-23814891)
chr5 (166-224)||(23691225-23691283)
chr5 (166-224)||(23754764-23754822)
chr5 (166-224)||(23774798-23774856)
chr5 (166-224)||(23820219-23820277)
chr5 (166-224)||(23861751-23861809)
[»] chr8 (2 HSPs)
chr8 (178-221)||(31145145-31145188)
chr8 (176-290)||(19727117-19727231)
[»] chr1 (1 HSPs)
chr1 (169-255)||(25611730-25611819)
[»] chr4 (2 HSPs)
chr4 (166-215)||(22672867-22672916)
chr4 (737-802)||(23976449-23976514)
[»] chr7 (1 HSPs)
chr7 (737-783)||(11372315-11372361)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 166 - 565
Target Start/End: Complemental strand, 3745292 - 3744891
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagattt 265  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  3745292 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagattt 3745193  T
Q  266 ctggaatgacgtcggaaggaagagtggtggacacacaaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttcctctgtcgtaga 365  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745192 ctggaatgacgtcggaaggaagagtggtggacacacgaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttcctctgtcgtaga 3745093  T
Q  366 ggaataaacggcaccgttttgatcacgcctcttgctacccgaagaagccatatacggttgtgactctaaaccctaaaaccttaaacctaatgaatgcaat 465  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||    
T  3745092 ggaataaacagcaccgttttgatcacgcctcttgctaccccaagaagccatattcagttgtgactctaaaccctaaaaccttaaacctaacgaatgcaat 3744993  T
Q  466 a--tatagaaggctgatatatctgattatnnnnnnnnnnnnnnnnnnnnnnngggctagtaacgagtgtttttgttttatgttatcttcgcatatctttc 563  Q
    |  ||||||||||||||||||||||||||                       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3744992 atatatagaaggctgatatatctgattataaaaaataaaaataaaaataaaagggctagtaacgagtgtttttgttttatgttatcttcgcatatctttc 3744893  T
Q  564 tt 565  Q
    ||    
T  3744892 tt 3744891  T

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Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 4142718 - 4142989
Alignment:
Q  18 aacttggcataaggccaatcagattgtgtgaagttagaggttatgtctgtgaaatcagagtccagtcggtaagatgtgagaatgtactttctttgagtca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  4142718 aacttggcataaggccaatcagattgtgtgaagttagaggttatgtctgtgaaatcagagtccagtggataagatgtgagaatgtactttctt-gagtca 4142816  T
Q  118 taggcgtagtttcggaagtggaggttccgagtggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142817 taggcgtagtttcggaagtggaggttccgagtggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaa 4142916  T
Q  218 cacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt 290  Q
    ||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||    
T  4142917 cacatcggaatcgaaggatgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagagt 4142989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 4158528 - 4158799
Alignment:
Q  18 aacttggcataaggccaatcagattgtgtgaagttagaggttatgtctgtgaaatcagagtccagtcggtaagatgtgagaatgtactttctttgagtca 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  4158528 aacttggcataaggccaatcagattgtgtgaagttagagtttatgtctgtgaaatcagagtcgagtgggtaagatgtgagaatgtactttctt-gagtca 4158626  T
Q  118 taggcgtagtttcggaagtggaggttccgagtggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaa 217  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4158627 taggcatagtttaggaagtggaggttccgagtggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaa 4158726  T
Q  218 cacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt 290  Q
    ||||| ||||||| ||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  4158727 cacattggaatcggaggatgaactttaccggtagcctacatatgatttctagaatgacgtcggaaggaagagt 4158799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 36 - 290
Target Start/End: Complemental strand, 3754037 - 3753784
Alignment:
Q  36 tcagattgtgtgaagttagaggttatgtctgtgaaatcagagtccagtcggtaagatgtgagaatgtactttctttgagtcataggc-gtagtttcggaa 134  Q
    ||||||||| ||||||||||||||||||||||||||  |||||| | | | |||||||||||||| |||||  | |||  ||  ||| ||||||| ||||    
T  3754037 tcagattgtatgaagttagaggttatgtctgtgaaaatagagtcgattggataagatgtgagaatatacttg-tgtgac-caacggctgtagtttaggaa 3753940  T
Q  135 gtggaggttccgagtggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaagg 234  Q
    ||||||||||| || | ||||||||| |||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  3753939 gtggaggttccaagcgatggacacactgagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagg 3753840  T
Q  235 atgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt 290  Q
    |||||||| ||||||| |||| ||| ||||||||||||||||||| ||||||||||    
T  3753839 atgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagt 3753784  T

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Target: chr3; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 728 - 922
Target Start/End: Complemental strand, 3744846 - 3744654
Alignment:
Q  728 ttattcaataataataactttaatattttga--------catatacaacaatgacatgtagtttgatgaaaaatagttaatatcagttaatatcaactgt 819  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  3744846 ttattcaataataataactttaatattttgaatatttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatatca----------actgt 3744757  T
Q  820 gacatccgtaaccattttctaagcagattttctaaagttcgaaaccaaacgtnnnnnnnnnnnnntacaatgggtagagagagagctatctatctattta 919  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||             |||||||||||||||||||||||||||||||||||    
T  3744756 gacatccgtaaccattttctaagcagattttctaaagtttgaaaccaaacgtaaaaaataaaaaatacaatgggtagagagagagctatctatctattta 3744657  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 916 - 959
Target Start/End: Complemental strand, 3734450 - 3734407
Alignment:
Q  916 tttatatacaaacttgagctatatattctaagttctgatgatgt 959  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  3734450 tttatatacaaacttgagctatatattctaagttatgatgatgt 3734407  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 967966 - 967869
Alignment:
Q  193 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt 290  Q
    |||||||||||||| |||||||| |||||||||||| | | || || ||| |||| ||||||| |||  |||||||||||||  ||| ||||||||||    
T  967966 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagagt 967869  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 1931892 - 1932008
Alignment:
Q  176 cgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgac 275  Q
    |||||||||| ||||| |||||||||||| ||||||||||||| || |||||||  |  | || ||| || | ||||||| | | ||||||||||||||     
T  1931892 cgaatttggggtcagagattagagaattctatgacttgcaaacgcaccggaatctcacaaggagcttcacggatagcctacagaggatttctggaatgag 1931991  T
Q  276 gtcggaaggaagagtgg 292  Q
     ||| ||||||||||||    
T  1931992 atcgaaaggaagagtgg 1932008  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 1937714 - 1937819
Alignment:
Q  187 tcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaa 286  Q
    ||||| |||||||||||| ||||||||||||| || |||||||  |||| ||  || |||| ||||||| | | ||||||||||||||  ||  ||||||    
T  1937714 tcagaaattagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaa 1937813  T
Q  287 gagtgg 292  Q
    ||||||    
T  1937814 gagtgg 1937819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 988727 - 988687
Alignment:
Q  176 cgaatttgggatcagatattagagaattccatgacttgcaa 216  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  988727 cgaatttgggatcagagattaaagaattccatgacttgcaa 988687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 803977 - 804012
Alignment:
Q  191 atattagagaattccatgacttgcaaacacatcgga 226  Q
    |||||||||||||||||||||||||||| |||||||    
T  803977 atattagagaattccatgacttgcaaacgcatcgga 804012  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 2679178 - 2679292
Alignment:
Q  178 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgt 277  Q
    ||||| ||||| || || ||||| |||||||||||||| |||||||||| | |||||| ||| || ||| ||| |||| | |  || ||||| |||| ||    
T  2679178 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgaggt 2679277  T
Q  278 cggaaggaagagtgg 292  Q
    || ||||||||||||    
T  2679278 cgaaaggaagagtgg 2679292  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 12132378 - 12132320
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| | ||||||||||||||||| ||||||||||| || ||||| || |||||    
T  12132378 tgcttcttggcaaatttgggatcagatatgagagaattccaggatttgcatacgcatcg 12132320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 2e-79; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 123 - 365
Target Start/End: Complemental strand, 11081546 - 11081304
Alignment:
Q  123 gtagtttcggaagtggaggttccgagtggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacat 222  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||||    
T  11081546 gtagtttaggaagtggaggtttcgagtggcggacacacggagttgtttcttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacacat 11081447  T
Q  223 cggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagtggtggacacacaaaggtgcttacttggtacaa 322  Q
     ||||||||||||||||||| ||||||| |||| ||| ||||||| ||||||  ||||||||||||||||| ||||||| ||||||||| | || |||||    
T  11081446 tggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagagtggtagacacacgaaggtgctttcctgatacaa 11081347  T
Q  323 ccgagagatgattgttgatggaagttgtttcctctgtcgtaga 365  Q
     |||||| ||||||||||||||||||||||||||| |||||||    
T  11081346 tcgagaggtgattgttgatggaagttgtttcctctatcgtaga 11081304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 1428479 - 1428608
Alignment:
Q  163 agttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataaga 262  Q
    |||||||||||| |||||||| ||||||  ||||||||||| |||| ||||||||  ||||||| | |||||| ||  || || ||||||||||  | ||    
T  1428479 agttgcttcttggcgaatttgagatcagtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacgggtagcctatggagga 1428578  T
Q  263 tttctggaatgacgtcggaaggaagagtgg 292  Q
    ||| || ||||| |||| ||||||||||||    
T  1428579 tttgtgaaatgatgtcgaaaggaagagtgg 1428608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 23764985 - 23765043
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23764985 tgcttcttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcg 23765043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 23814833 - 23814891
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23814833 tgcttcttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcg 23814891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 23691283 - 23691225
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| |||||||||||||||| ||||||||||||||   |||||| ||||||||    
T  23691283 tgcttcttggcgaatttgggatcagaaattagagaattccacagcttgcacacacatcg 23691225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 23754764 - 23754822
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23754764 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcg 23754822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 23774798 - 23774856
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23774798 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcg 23774856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 23820219 - 23820277
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23820219 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcg 23820277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 23861751 - 23861809
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 224  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23861751 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcg 23861809  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 31145145 - 31145188
Alignment:
Q  178 aatttgggatcagatattagagaattccatgacttgcaaacaca 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  31145145 aatttgggatcagatataagagaattccatgacttgcaaacaca 31145188  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 19727231 - 19727117
Alignment:
Q  176 cgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgac 275  Q
    |||||||| ||||||| |||||||||||| | ||||||||||||||||||||  | | || ||| || || |||||||||  ||  |||||||||||||     
T  19727231 cgaatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaatgag 19727132  T
Q  276 gtcggaaggaagagt 290  Q
     ||| ||||||||||    
T  19727131 atcgaaaggaagagt 19727117  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 25611730 - 25611819
Alignment:
Q  169 ttcttgacgaatttgggatca---gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 255  Q
    |||||||| || |||||||||   |||||||||||||||||||||||||| || || | |||| |||||| |||||||||||| ||||||    
T  25611730 ttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagccta 25611819  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 22672867 - 22672916
Alignment:
Q  166 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgca 215  Q
    ||||||||  |||||||| ||||||| |||||||||||||||||||||||    
T  22672867 tgcttcttagcgaatttgcgatcagagattagagaattccatgacttgca 22672916  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 802
Target Start/End: Original strand, 23976449 - 23976514
Alignment:
Q  737 aataataactttaatattttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatat 802  Q
    |||||| ||||| |||||||||||||||||||| | |||||||||||   ||| ||||||||||||    
T  23976449 aataatgactttcatattttgacatatacaacactaacatgtagtttagcgaataatagttaatat 23976514  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 737 - 783
Target Start/End: Complemental strand, 11372361 - 11372315
Alignment:
Q  737 aataataactttaatattttgacatatacaacaatgacatgtagttt 783  Q
    |||||| ||||| |||||||||||||||||||| | |||||||||||    
T  11372361 aataatgacttttatattttgacatatacaacattaacatgtagttt 11372315  T

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