View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6128_low_3 (Length: 571)
Name: NF6128_low_3
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6128_low_3 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Complemental strand, 12892919 - 12892368
Alignment:
| Q |
8 |
cgaagaatatacatagttggaatcattaccagacagaccaatatgtc----aatatcacttaagcaacatcagctacaaatatgctgcccgaatcacacc |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12892919 |
cgaaaaatatacatagttggaatcattaccggacagaccaatatgtctgtcaatatcacttaagcaacatcaactacaaatatgctgcccgaatcacacc |
12892820 |
T |
|
| Q |
104 |
atccacctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttgagccaacaaatgttaaaaataagtat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12892819 |
atccacctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttgagccaacaaatgttaaaaataagtat |
12892720 |
T |
|
| Q |
204 |
aggaaaagctccaaaaatagaaaatagaattctgccaaggttatttatgtgcctggtaaaacagcaaatgtgagtggcagtgttgcgcctaagtttaaca |
303 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
12892719 |
agaaaaagctccaaaaatagaaaatagaattctgccaaggttatttatgtgcctggtaaaacaacaaatgtgagtggcagtgttgtgcctaagtttgaca |
12892620 |
T |
|
| Q |
304 |
ttatttaacactaacgaaagaaccacgatccttgaagaattccaaatttcaatagtttaactaaagaatgtacgattaagaaaaccactatctagtgttt |
403 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12892619 |
ttatttaacactaatgaaagaaccacgatcctcaaagaattcaaaatatcaatagtttaactaaagaatgtacgattaagaaaaccactatctagtattt |
12892520 |
T |
|
| Q |
404 |
ggggagcaaagatttacaaatcatgcctactacagactttcctaaatgcttaagatgctatgtgaagttacataattggacttgtc-ttcccatagcatt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
12892519 |
ggggagcaaagatttacaaatcatgcctactacagactttcctaaatgctgaagatgc--tgtgaagttacataattggacttatctttcccatagcatt |
12892422 |
T |
|
| Q |
503 |
aatgaagggtaactttgtaaactaagttatagtttctcattctcatacgaaatt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12892421 |
aatgaagggtaactttgtaaactaagttataatttctcattctcatacgaaatt |
12892368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Complemental strand, 7217 - 6669
Alignment:
| Q |
8 |
cgaagaatatacatagttggaatcattaccagacagaccaatatgtcaatatcacttaagcaacatcagctacaaatatgctgcccgaatcacaccatcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7217 |
cgaaaaatatacatagttggaatcattaccggacagaccaatatgtcaatatcacttaagcaacatcagctacaaatatgctgcccgaatcacaccatcc |
7118 |
T |
|
| Q |
108 |
acctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttgagccaacaaatgttaaaaataagtatagga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
7117 |
acctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttaagccaacaaatgttaaaaataagtatagaa |
7018 |
T |
|
| Q |
208 |
aaagctccaaaaatagaaaatagaattctgccaaggttatttatgtgcctggtaaaacagcaaatgtgagtggcagtgttgcgcctaagtttaacattat |
307 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
7017 |
aaagctccaaaagaagaaaatagaattctgccaaggttatttatgtacctggtaaaa-aacaaatgtgagtggcagtgttgtgcctaagtttgacattat |
6919 |
T |
|
| Q |
308 |
ttaacactaacgaaagaaccacgatccttgaagaattccaaatttcaatagtttaactaaagaatgtacgattaagaaaaccactatctagtgtttgggg |
407 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
6918 |
ttaacactaatgaaagaaccacgatcctcgaagaattccaaatttcaatagtttaactaaagaatgtacaattaagaaaaccactatctagtatttgggg |
6819 |
T |
|
| Q |
408 |
agcaaagatttacaaatcatgcctactacagactttcctaaatgcttaagatgctatgtgaagttacataattggacttgtc-ttcccatagcattaatg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||||| |
|
|
| T |
6818 |
agcaaagatttacaaatcatgcctactacagacttccctaaatgcttaagatgctatgtgaagttacgtaattggttttatctttcccataccattaatg |
6719 |
T |
|
| Q |
507 |
aagggtaactttgtaaactaagttatagtttctcattctcatacgaaatt |
556 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6718 |
aagggtaactttgtaaactaagttataatttctcattctcatacgaaatt |
6669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University