View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6128_low_4 (Length: 360)

Name: NF6128_low_4
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6128_low_4
NF6128_low_4
[»] chr7 (5 HSPs)
chr7 (12-344)||(8299450-8299782)
chr7 (70-221)||(11226207-11226358)
chr7 (70-113)||(1466792-1466835)
chr7 (47-213)||(1909654-1909820)
chr7 (256-334)||(1909546-1909623)
[»] chr4 (2 HSPs)
chr4 (12-287)||(5450571-5450843)
chr4 (70-286)||(4608372-4608587)
[»] scaffold0168 (1 HSPs)
scaffold0168 (84-173)||(24143-24232)
[»] scaffold0070 (1 HSPs)
scaffold0070 (70-146)||(3416-3492)
[»] chr1 (4 HSPs)
chr1 (48-111)||(34744059-34744121)
chr1 (254-334)||(24464770-24464849)
chr1 (70-108)||(19865965-19866003)
chr1 (70-142)||(24464934-24465006)
[»] chr5 (4 HSPs)
chr5 (115-175)||(18477034-18477094)
chr5 (73-173)||(10282443-10282543)
chr5 (70-146)||(18757753-18757828)
chr5 (70-120)||(16102641-16102691)
[»] chr2 (1 HSPs)
chr2 (115-175)||(20488710-20488770)
[»] chr3 (2 HSPs)
chr3 (79-220)||(7857677-7857816)
chr3 (12-102)||(17631235-17631327)
[»] chr6 (1 HSPs)
chr6 (70-118)||(20587552-20587600)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 8299450 - 8299782
Alignment:
Q  12 tatactaatttaaatgatatttgtatcaattaggctttt-ttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatatttta 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  8299450 tatactaatttaaatgatatttgtatcaattaggctttttttataattgatttctaccaaaaacaagtcggtaagtgttatggaaaataacaatatttta 8299549  T
Q  111 gcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacattcgagtgaatgcaagaaaataaatcacaagga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  8299550 gcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacatttgagtggatgcaagaaaaaaaatcacaagga 8299649  T
Q  211 ttttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaatagaattgtgcgggcaagtcttatgtataccactaaccgggtacaaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||    
T  8299650 ttttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaatagaattgtacgggcaagtctta-gtataccactaacctggaacaaaa 8299748  T
Q  311 atcatgaacataaaatttattcaaaacaggtagt 344  Q
    ||||||||||||||||||||||||||||||||||    
T  8299749 atcatgaacataaaatttattcaaaacaggtagt 8299782  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 11226358 - 11226207
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaa 169  Q
    ||||||| ||||||||||||||| ||||||||| || ||| ||| |||| ||||||||||| |||  |||||||||| || ||||| |||||||||||||    
T  11226358 aaaacaaatcgataagtgctatgaaaaataacagtaattt-gcacttatcaactctccccaccttttaactttgtttgtcgtcaaacaaaagtcctaaaa 11226260  T
Q  170 aagatacattcgagtgaatgcaaga---aaataaatcacaaggattttcagtgaa 221  Q
    ||||||||  ||| ||||||||| |   |||| | ||||||||||||| ||||||    
T  11226259 aagataca--cgattgaatgcaaaaaagaaatgattcacaaggatttttagtgaa 11226207  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 1466835 - 1466792
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1466835 aaaacaagtcgataagtgctatggaaaataacaatattttagca 1466792  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 213
Target Start/End: Complemental strand, 1909820 - 1909654
Alignment:
Q  47 ttttttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgttt 146  Q
    |||| ||| ||||||||||   |||||||||| |||||||||||| ||||| |||||||||||| || |||| || ||| |  |||||| ||||||||||    
T  1909820 ttttctatgattgatttcttgaaaaaacaagttgataagtgctatagaaaaaaacaatattttaacacttatcaaatcttcttaacttaaaactttgttt 1909721  T
Q  147 ttcatcaaataaaagtcctaaaaaagatacattcgagtgaatgcaagaaaataaatcacaaggattt 213  Q
     || | ||| |||| |  | ||| ||||||||| || | |||||||| |||||| | ||||| ||||    
T  1909720 gtcgtgaaacaaaaattttcaaatagatacatttgattaaatgcaagtaaataatttacaagaattt 1909654  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 1909623 - 1909546
Alignment:
Q  256 attcaaatagaattgtgcgggcaagtcttatgtataccactaaccgggtacaaaaatcatgaacataaaatttattcaa 334  Q
    |||||||| | ||||| || ||||||||||||| ||||||||| | || || ||| ||||||||||||||||| |||||    
T  1909623 attcaaattggattgtacgagcaagtcttatgtctaccactaaactggaac-aaagtcatgaacataaaatttgttcaa 1909546  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 5450843 - 5450571
Alignment:
Q  12 tatactaatttaaatgatatttgtatcaa-----ttaggcttttttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatat 106  Q
    ||||||||| |||| ||||||||||||||     | |||  ||||||||| ||||||||  ||||| ||  ||||||| |||||||||||||||||||||    
T  5450843 tatactaatataaacgatatttgtatcaaactgatgaggtatttttataaatgatttctcgcaaaa-cacttcgataactgctatggaaaataacaatat 5450745  T
Q  107 tttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacattcgagtgaatgcaagaaaataaatcaca 206  Q
    ||| ||| |||| ||| |||||||||||| |||| ||||| || ||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  5450744 tttggcacttatcaacgctccccaacttataactctgtttgtcctcaaacaaatg-cctaaaaaagatacattcgattgaatgcaagaaaataaatcaca 5450646  T
Q  207 aggattttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaatagaattgtgcgggcaagtcttatg 287  Q
    || |||||| ||||| ||  | ||||||    |||||||||||||  ||||||| || | ||| ||| |||||||||||||    
T  5450645 agaattttcggtgaatca--aacatttt----gaattttaagatgcttgattcagattggattctgctggcaagtcttatg 5450571  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 286
Target Start/End: Complemental strand, 4608587 - 4608372
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaa 169  Q
    ||||||||||||||||||| ||| ||||||  | || |||  || |||| ||| |||||||||||||||||||||||||| ||||| ||||||  | |||    
T  4608587 aaaacaagtcgataagtgcaatgaaaaatataagtaatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttatgaaa 4608488  T
Q  170 aagatacattcgagtgaatgcaagaaaataaatcacaaggattttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaa-tagaat 268  Q
    |||||||||  || | ||||||||||||| | ||||||||||||| ||||||  | ||   |||||||| |||||| | |||  ||||||||| | ||||    
T  4608487 aagatacat--gattaaatgcaagaaaatgattcacaaggattttaagtgaattaataagtttttgaaacaattttgaaatgcatgattcaaagttgaat 4608390  T
Q  269 tgtgcgggcaagtcttat 286  Q
    ||| ||||||||||||||    
T  4608389 tgtacgggcaagtcttat 4608372  T

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Target: scaffold0168 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 24143 - 24232
Alignment:
Q  84 agtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaaga 173  Q
    |||||||| |||||||||| |||||||||| |||| |||||||||||||||| | |||||||| || ||||| ||| | |||||| ||||    
T  24143 agtgctattgaaaataacagtattttagcacttatcaactctccccaacttaaatctttgtttgtcctcaaacaaatgccctaaataaga 24232  T

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Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 3416 - 3492
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgttt 146  Q
    ||||||||| ||||| |||||||||||||||| ||| ||| ||| |||| |||| || |||||||||||||||||||    
T  3416 aaaacaagttgataaatgctatggaaaataactataatttggcacttatcaactgtctccaacttagaactttgttt 3492  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 34744121 - 34744059
Alignment:
Q  48 tttttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatattttag 111  Q
    ||||||| ||||||||||  ||||| |||||| |||||||||||||||||||||||||||||||    
T  34744121 tttttatgattgatttcttgcaaaa-caagtcaataagtgctatggaaaataacaatattttag 34744059  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 24464849 - 24464770
Alignment:
Q  254 tgattcaaatagaattgtgcgggcaagtcttatgtataccactaaccgggtacaaaaatcatgaacataaaatttattcaa 334  Q
    |||||||||  ||||||||||| | |||||||||| ||||||||||  || || ||| ||||||||||||||||| |||||    
T  24464849 tgattcaaaatgaattgtgcggacgagtcttatgtctaccactaacatggaac-aaagtcatgaacataaaatttgttcaa 24464770  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 19865965 - 19866003
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattt 108  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  19865965 aaaacaagtcgataagtgctatgtaatataacaatattt 19866003  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 24465006 - 24464934
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaacttt 142  Q
    ||||||||||||||| | || || ||||||| | || |||| || |||| ||||||||||| |||||||||||    
T  24465006 aaaacaagtcgataactactttgaaaaataatagtactttaacacttatcaactctccccatcttagaacttt 24464934  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 18477034 - 18477094
Alignment:
Q  115 ttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagata 175  Q
    |||| |||||||||||||||||| |||||||| |  ||||| |||||||||||||||||||    
T  18477034 ttatcaactctccccaacttagagctttgtttgtactcaaacaaaagtcctaaaaaagata 18477094  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 10282543 - 10282443
Alignment:
Q  73 acaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaag 172  Q
    |||||||||| | | ||||  |||||||||||| ||| ||| |||| |||||| ||||||||||| |||||||| || ||||| || | |||| ||||||    
T  10282543 acaagtcgattaatactataaaaaataacaataatttggcacttatcaactcttcccaacttagagctttgtttgtcctcaaacaataatcctcaaaaag 10282444  T
Q  173 a 173  Q
    |    
T  10282443 a 10282443  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 18757828 - 18757753
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgttt 146  Q
    |||||||||||||||||  |||||||||||||| || |||  || |||| || ||||||||||||| ||||||||||    
T  18757828 aaaacaagtcgataagtt-tatggaaaataacagtaatttgacacttattaattctccccaacttaaaactttgttt 18757753  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 16102691 - 16102641
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataa 120  Q
    ||||||| |||||||||| |||| ||||||||||||||||| || ||||||    
T  16102691 aaaacaaatcgataagtgttatgaaaaataacaatattttaacacttataa 16102641  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 20488710 - 20488770
Alignment:
Q  115 ttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagata 175  Q
    |||| ||||| |||||||||||||||||||||||| ||||| ||||| ||| |||||||||    
T  20488710 ttatcaactccccccaacttagaactttgtttttcctcaaacaaaaggcctcaaaaagata 20488770  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 7857677 - 7857816
Alignment:
Q  79 cgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacat 178  Q
    ||||||||| | ||||||||||||||| ||| ||| |||| |||||   |||||| |||||||||||| || | ||| ||||||||  ||||||||| ||    
T  7857677 cgataagtgttttggaaaataacaataatttggcacttatcaactcattccaactaagaactttgtttgtccttaaacaaaagtcc--aaaaagatatat 7857774  T
Q  179 tcgagtgaatgcaagaaaataaatcacaaggattttcagtga 220  Q
      || ||||||  ||||||| |  |||||||||||| |||||    
T  7857775 atgattgaatgtgagaaaatgatccacaaggatttttagtga 7857816  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 17631327 - 17631235
Alignment:
Q  12 tatactaatttaaatgatatttgtatcaattaggcttttttata--attgatttctaccaaaaacaagtcgataagtgctatggaaaataaca 102  Q
    ||||||||| |||| |||||||||||||| | ||   |||||||  ||||||||||  ||||||||||||||||||| |||||| || |||||    
T  17631327 tatactaatataaacgatatttgtatcaacttgggggttttatatgattgatttcttacaaaaacaagtcgataagtactatggtaactaaca 17631235  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 20587552 - 20587600
Alignment:
Q  70 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttat 118  Q
    |||||||||| ||| |||||||||||||||||| ||| |||||| ||||    
T  20587552 aaaacaagtcaatatgtgctatggaaaataacactatgttagcacttat 20587600  T

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