View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6128_low_5 (Length: 291)
Name: NF6128_low_5
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6128_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 46635914 - 46636176
Alignment:
| Q |
19 |
cttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtgagtaacactatattacttttatgccttgt |
118 |
Q |
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| T |
46635914 |
cttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtgagtaacactatattacttttatgccttgt |
46636013 |
T |
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| Q |
119 |
tataattcatacttaaagtatcctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagctgcgattttagtctttaattatctg |
218 |
Q |
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| T |
46636014 |
tataattgatacttaaagtatgctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagccgcgattttagtctttaattatctg |
46636113 |
T |
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| Q |
219 |
gttttgttttcctatatttcttggcagatggtgtcctttaaccagaattataatgatattttc |
281 |
Q |
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| T |
46636114 |
gttttgttttcctatatttcttggcagatggtgtcctttaaccagaattataatgatattttc |
46636176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 81 - 281
Target Start/End: Original strand, 46617279 - 46617478
Alignment:
| Q |
81 |
tggttggtgagtaacactatattacttttatgccttgttataattcatacttaaagtatcctcttgatgatgtaatctaatctacatttcctttataaca |
180 |
Q |
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| T |
46617279 |
tggttgatgagtaacactgctttacttttatgcctcgtcacaactgatactttaagtatgctcttgatgatgttatctaatctacatttcctttataa-a |
46617377 |
T |
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| Q |
181 |
tttcttcttaagctgcgattttagtctttaattatctggttttgttttcctatatttcttggcagatggtgtcctttaaccagaattataatgatatttt |
280 |
Q |
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| T |
46617378 |
tttcttcttaaggcatgatttgactctttagttatctggttttgttttactatatttctttgcagatggtgtcctttaaccagaattataacgttatttt |
46617477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 100 - 266
Target Start/End: Complemental strand, 46644341 - 46644176
Alignment:
| Q |
100 |
tattacttttatgccttgttataattcatacttaaagtatcctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagctgcgat |
199 |
Q |
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|||||||||||||| | |||| || ||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
46644341 |
tattacttttatgcttggttacaactcaagcttgaagtatgttcttgatgatgttatctaatctacatttcctttataacatttcttcttaagccatcat |
46644242 |
T |
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| Q |
200 |
tttagtctttaattatctggttttgttttcctatatttcttggcagatggtgtcctttaaccagaat |
266 |
Q |
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| T |
46644241 |
ttgagtgtttagttatctgg-tttgttttcctatttttcttggcagatggtgtcctttgagcagaat |
46644176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 46628788 - 46628850
Alignment:
| Q |
219 |
gttttgttttcctatatttcttggcagatggtgtcctttaaccagaattataatgatattttc |
281 |
Q |
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| T |
46628788 |
gttttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttc |
46628850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 18376392 - 18376269
Alignment:
| Q |
120 |
ataattcatacttaaagtatcctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagctgcgattttagtctttaattatctgg |
219 |
Q |
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|||| |||| ||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||| |||||||| ||||| ||| ||||||||||||| |
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| T |
18376392 |
ataactcatgcttgaagtatgctctagatgatgttatctaatctacatttcctttataa-atttcgtcttaagccatgatttgagtgtttaattatctgg |
18376294 |
T |
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| Q |
220 |
ttttgttttcctatatttcttggca |
244 |
Q |
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|||||||||||||| |||||||||| |
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| T |
18376293 |
ttttgttttcctatttttcttggca |
18376269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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