View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6128_low_6 (Length: 284)
Name: NF6128_low_6
Description: NF6128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6128_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 48692939 - 48692690
Alignment:
| Q |
18 |
ctaccacaaccttggctgataaattaagcaatgtatttatttatgattgtaagttcatttatctatttgtcttatcaaatccatgtatatgacaaaaagc |
117 |
Q |
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| T |
48692939 |
ctaccacaaccttggctgataaattaagcaatgtatttaattg-----gcaagttcatttatctatttgtcttatcaaatccatgtatatgacaaaaagc |
48692845 |
T |
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| Q |
118 |
atatatttggtgaatcaaatatgctatttaaacaaacaaaataacaaattgaataggatgaaaataagcaggaatcatgaactcaccaccccaacaaaaa |
217 |
Q |
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| T |
48692844 |
atatatttggtgaatcaaatatgctatttaaacaaccaaaataacaaattaaataggatgaaaataagcaggaatcaggaactcaccaccccaacaaaaa |
48692745 |
T |
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| Q |
218 |
gaggcagctcctatagacaaaacacctttgtgttttaaagcttcaatcacaggtt |
272 |
Q |
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| T |
48692744 |
gaggcagctcctatagacaaaacacctttgtgttttaaagcttcaatcactggtt |
48692690 |
T |
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