View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6129_high_2 (Length: 274)

Name: NF6129_high_2
Description: NF6129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6129_high_2
NF6129_high_2
[»] chr6 (7 HSPs)
chr6 (11-256)||(27588155-27588401)
chr6 (131-190)||(28790443-28790502)
chr6 (137-187)||(25079849-25079899)
chr6 (137-189)||(26909808-26909860)
chr6 (131-175)||(19413283-19413327)
chr6 (92-133)||(26909730-26909772)
chr6 (133-190)||(26807546-26807602)
[»] scaffold0419 (1 HSPs)
scaffold0419 (131-190)||(11586-11645)
[»] scaffold0277 (2 HSPs)
scaffold0277 (131-190)||(564-623)
scaffold0277 (131-190)||(9697-9756)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 27588401 - 27588155
Alignment:
Q  11 cacagaatctatggcttgtacgaaagggtattgggtaatgatatgcttaacatctcagttttacattgggtattgtgaatggaacattgacatgatcctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588401 cacagaatctatggcttgtacgaaagggtattgggtaatgatatgcttaacatctcagttttacattgggtattgtgaatggaacattgacatgatcctt 27588302  T
Q  111 ctgcatctcgacgtatcttcatttgtgttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgtgc-nnnnnnnnntcactgttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  27588301 ctgcatctcgacgtatcttcatttgtgttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgtgcaaaaaaaaaatcactgttt 27588202  T
Q  210 actaggtgttttgactttcgacatagatatttagtagaacttaaaag 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27588201 actaggtgttttgactttcgacatagatatttagtagaacttaaaag 27588155  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 28790443 - 28790502
Alignment:
Q  131 atttgtgttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgtg 190  Q
    ||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||||||    
T  28790443 atttgtgttttaggttacttctctaatgctaaaaacttgttctctctccccaaaaatgtg 28790502  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 25079849 - 25079899
Alignment:
Q  137 gttttagattacttctctaatgctaaaatattgttccctctccccaaaaat 187  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  25079849 gttttagattacttctctaatactaaaaaattgttccctctccccaaaaat 25079899  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 26909808 - 26909860
Alignment:
Q  137 gttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgt 189  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  26909808 gttttagagtacttctctaatgctaaaatatcgctccctctccccaaaaatgt 26909860  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 19413283 - 19413327
Alignment:
Q  131 atttgtgttttagattacttctctaatgctaaaatattgttccct 175  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||    
T  19413283 atttatgttttagattacttctctaatgctaaaaaagtgttccct 19413327  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 26909730 - 26909772
Alignment:
Q  92 gaacattg-acatgatccttctgcatctcgacgtatcttcatt 133  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  26909730 gaacattgcacatgatccttctgcatctcgatgtatcttcatt 26909772  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 26807546 - 26807602
Alignment:
Q  133 ttgtgttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgtg 190  Q
    ||||||||||||||||||||||| |||||||| |  || || ||||||||||||||||    
T  26807546 ttgtgttttagattacttctctagtgctaaaa-accgtgccatctccccaaaaatgtg 26807602  T

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Target: scaffold0419 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 11586 - 11645
Alignment:
Q  131 atttgtgttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgtg 190  Q
    ||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||||||    
T  11586 atttgtgttttaggttacttctctaatgctaaaaacttgttctctctccccaaaaatgtg 11645  T

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Target: scaffold0277 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 623 - 564
Alignment:
Q  131 atttgtgttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgtg 190  Q
    ||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||||||    
T  623 atttgtgttttaggttacttctctaatgctaaaaacttgttctctctccccaaaaatgtg 564  T

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Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 9756 - 9697
Alignment:
Q  131 atttgtgttttagattacttctctaatgctaaaatattgttccctctccccaaaaatgtg 190  Q
    ||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||||||    
T  9756 atttgtgttttaggttacttctctaatgctaaaaacttgttctctctccccaaaaatgtg 9697  T

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