View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6129_low_1 (Length: 557)

Name: NF6129_low_1
Description: NF6129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6129_low_1
NF6129_low_1
[»] chr2 (23 HSPs)
chr2 (16-540)||(37185206-37185730)
chr2 (150-421)||(28699649-28699919)
chr2 (165-415)||(31753024-31753274)
chr2 (150-421)||(13515880-13516152)
chr2 (165-421)||(19937471-19937728)
chr2 (150-422)||(44900083-44900356)
chr2 (150-407)||(2548406-2548664)
chr2 (161-388)||(10291611-10291840)
chr2 (206-327)||(13794391-13794513)
chr2 (135-287)||(32315778-32315929)
chr2 (150-291)||(44898916-44899055)
chr2 (338-407)||(31510815-31510884)
chr2 (153-283)||(13304997-13305128)
chr2 (212-392)||(17369219-17369401)
chr2 (167-308)||(3531387-3531527)
chr2 (192-241)||(13312327-13312376)
chr2 (135-227)||(12495084-12495176)
chr2 (337-421)||(13794508-13794592)
chr2 (336-387)||(14438374-14438425)
chr2 (348-421)||(29480135-29480208)
chr2 (233-326)||(31513260-31513353)
chr2 (353-389)||(26383866-26383902)
chr2 (329-369)||(34602077-34602117)
[»] chr8 (13 HSPs)
chr8 (133-421)||(30996936-30997220)
chr8 (135-389)||(34240718-34240973)
chr8 (135-414)||(24115149-24115429)
chr8 (272-421)||(38667755-38667905)
chr8 (135-414)||(24118787-24119067)
chr8 (164-382)||(11783931-11784152)
chr8 (142-311)||(17465991-17466161)
chr8 (140-420)||(44134085-44134362)
chr8 (337-383)||(15568509-15568555)
chr8 (163-224)||(16077799-16077860)
chr8 (353-389)||(17526798-17526834)
chr8 (168-264)||(28235992-28236088)
chr8 (373-421)||(35520855-35520903)
[»] chr6 (17 HSPs)
chr6 (150-400)||(14510152-14510405)
chr6 (135-421)||(21384080-21384367)
chr6 (135-389)||(24122891-24123141)
chr6 (177-359)||(10344984-10345167)
chr6 (150-227)||(23107766-23107843)
chr6 (173-294)||(24122707-24122828)
chr6 (133-286)||(1699522-1699672)
chr6 (334-421)||(24121956-24122043)
chr6 (140-286)||(34445757-34445903)
chr6 (334-388)||(24250902-24250956)
chr6 (334-389)||(20763849-20763904)
chr6 (132-223)||(2264763-2264854)
chr6 (134-224)||(8338174-8338264)
chr6 (351-389)||(34445959-34445997)
chr6 (337-390)||(17536675-17536728)
chr6 (164-264)||(16362678-16362777)
chr6 (192-264)||(20718487-20718559)
[»] chr3 (15 HSPs)
chr3 (131-386)||(32889548-32889805)
chr3 (158-389)||(19276361-19276595)
chr3 (134-400)||(28426346-28426611)
chr3 (133-265)||(16139711-16139843)
chr3 (135-285)||(7434623-7434773)
chr3 (135-261)||(16233714-16233841)
chr3 (150-224)||(806050-806124)
chr3 (133-229)||(7770460-7770557)
chr3 (244-400)||(30610539-30610699)
chr3 (135-204)||(11509196-11509265)
chr3 (150-227)||(30554166-30554243)
chr3 (150-224)||(809502-809576)
chr3 (164-264)||(14753765-14753866)
chr3 (334-389)||(14064244-14064299)
chr3 (133-224)||(14259529-14259619)
[»] chr4 (21 HSPs)
chr4 (131-421)||(12195527-12195817)
chr4 (134-422)||(25935080-25935369)
chr4 (141-421)||(34050179-34050459)
chr4 (140-267)||(13857846-13857973)
chr4 (140-267)||(13869376-13869503)
chr4 (135-290)||(12194812-12194967)
chr4 (140-286)||(50051143-50051289)
chr4 (246-388)||(36539474-36539617)
chr4 (150-287)||(14002366-14002503)
chr4 (285-427)||(12193518-12193658)
chr4 (214-387)||(36543920-36544094)
chr4 (337-389)||(49022618-49022670)
chr4 (162-319)||(17397711-17397870)
chr4 (150-263)||(9157272-9157385)
chr4 (336-389)||(12324553-12324606)
chr4 (168-264)||(1676784-1676880)
chr4 (168-264)||(1683312-1683408)
chr4 (135-310)||(11134277-11134451)
chr4 (339-389)||(12327761-12327811)
chr4 (187-265)||(23620788-23620866)
chr4 (347-388)||(50051309-50051350)
[»] chr5 (12 HSPs)
chr5 (135-385)||(27649053-27649304)
chr5 (150-389)||(16696034-16696271)
chr5 (150-424)||(20568132-20568404)
chr5 (135-285)||(26067053-26067203)
chr5 (134-209)||(29810257-29810332)
chr5 (176-261)||(25918564-25918649)
chr5 (150-206)||(28753186-28753243)
chr5 (339-388)||(26067249-26067298)
chr5 (176-229)||(37551385-37551438)
chr5 (176-229)||(37606872-37606925)
chr5 (176-229)||(37779082-37779135)
chr5 (337-377)||(27073610-27073650)
[»] chr1 (14 HSPs)
chr1 (134-421)||(22224476-22224762)
chr1 (212-415)||(51183718-51183921)
chr1 (148-226)||(18041673-18041751)
chr1 (336-392)||(3089071-3089127)
chr1 (339-392)||(52909656-52909709)
chr1 (334-389)||(20194759-20194814)
chr1 (187-380)||(14434193-14434385)
chr1 (152-263)||(18036170-18036280)
chr1 (322-415)||(30510603-30510697)
chr1 (233-348)||(6142216-6142332)
chr1 (133-224)||(52909459-52909550)
chr1 (133-223)||(40608982-40609072)
chr1 (336-422)||(52909857-52909943)
chr1 (180-224)||(19453895-19453939)
[»] chr7 (12 HSPs)
chr7 (134-415)||(2591735-2592015)
chr7 (279-422)||(18298776-18298920)
chr7 (134-413)||(10301899-10302176)
chr7 (131-224)||(17345807-17345900)
chr7 (135-382)||(4157690-4157936)
chr7 (272-407)||(4154285-4154420)
chr7 (135-229)||(18298937-18299031)
chr7 (192-389)||(12257272-12257464)
chr7 (362-421)||(15582951-15583010)
chr7 (281-361)||(18310552-18310633)
chr7 (144-288)||(15583011-15583155)
chr7 (135-188)||(18310698-18310751)
[»] scaffold0044 (1 HSPs)
scaffold0044 (150-261)||(58756-58867)
[»] scaffold0102 (2 HSPs)
scaffold0102 (150-229)||(25423-25502)
scaffold0102 (341-389)||(25262-25310)
[»] scaffold0474 (1 HSPs)
scaffold0474 (213-407)||(6339-6533)
[»] scaffold0056 (1 HSPs)
scaffold0056 (334-389)||(19096-19151)
[»] scaffold0050 (1 HSPs)
scaffold0050 (134-221)||(32117-32205)
[»] scaffold0374 (1 HSPs)
scaffold0374 (340-394)||(11966-12020)
[»] scaffold0024 (1 HSPs)
scaffold0024 (135-223)||(121080-121169)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Original strand, 37185206 - 37185730
Alignment:
Q  16 atgaagcaacacatgcattgcctgcttgagccttccattcacaatctgcatgaaggaccaattcaagaatttaaaattattatcacaacttataaaacaa 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37185206 atgaagcaacgcatgcattgcctgcttgagccttccattcacaatctgcatgaaggaccaattcaagaatttaaaattattatcacaacttataaaacaa 37185305  T
Q  116 ataaagatttattggatattgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37185306 ataaagatttattggatattgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggta 37185405  T
Q  216 tttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagtt 315  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37185406 tttatagccctttcaaggcttgtttttacgtgacttaagccccaagcaagctgggttttaagtctttttactaagctctagatacttctagaagctagtt 37185505  T
Q  316 gaggcagcgcctcgggaaggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgac 415  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37185506 gaggcggcgcctcaggaaggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaagaatgtattgac 37185605  T
Q  416 tgtccaaatataatttttatttgtatatatgaatcaatcatctattaatgttggaaaaaatttcacctgttgtaccacagcatagtctacgatcatctat 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  37185606 tgtccaaatataatttttatttgtatatatgaatcaatcatctattaatgttggaaaagttttcacctgttgtaccacagcatagtctacgatcatctat 37185705  T
Q  516 gtgttccacatcaagtccaataaac 540  Q
    |||||||||||||||||||||||||    
T  37185706 gtgttccacatcaagtccaataaac 37185730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 150 - 421
Target Start/End: Original strand, 28699649 - 28699919
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    ||||||| || || ||||||||||  |||||| ||  |||| |||||||||||| |||||||||||||||||||||||||   |||||||||  ||||||    
T  28699649 tacaatattaaaaactagggtttagcctgttt-tgtcatgccttgagaatgatctcaagaggggtatttatagccctttgtgtgcttgttttcgcgtgac 28699747  T
Q  250 ttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctc-gggaaggcgcgcctaggcct 348  Q
    ||||||| |||||||||| ||  |||||| ||||||||||||||||||| |||||||||||||| |||||  ||||||| |||| |||||||||||||||    
T  28699748 ttaagccacaagcaagct-ggccttaagtatttttactaagctctagatgcttctagaagctagatgaggtggcgcctctgggagggcgcgcctaggcct 28699846  T
Q  349 caggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||    
T  28699847 caggagcccttctggagggcgcctaagcctttctagagggcattcgagcccttaggaatatattgacggtcca 28699919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 165 - 415
Target Start/End: Complemental strand, 31753274 - 31753024
Alignment:
Q  165 tagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaa 264  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||   ||||||| || | |||||||||||||||| ||    
T  31753274 tagggtttagactgtttatgagatgctttgagaatgatcccaagagggatatttatggccctttgtgggcttgttctttcatgacttaagccccaagaaa 31753175  T
Q  265 gctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaaggcgcgcctaggcctcaggagcccttctgga 364  Q
    | | ||  |||||||||||||||||||||| ||| ||||| |||| ||||| ||||  ||||||  || |||||||||||||||   |||||||| ||||    
T  31753174 gatgggccttaagtctttttactaagctctggatgcttcttgaagttagttaaggcgacgcctctagagggcgcgcctaggccttgtgagcccttatgga 31753075  T
Q  365 gggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgac 415  Q
    |||| ||| |||||||||||||||||||||| || | |||||| |||||||    
T  31753074 gggctccttagcctttctagagggcattcgagcctttaggaatatattgac 31753024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 150 - 421
Target Start/End: Original strand, 13515880 - 13516152
Alignment:
Q  150 tacaataatagaatctagggtttaaactgttt--atgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtg 247  Q
    ||||||| ||||||||| |||||| |||||||  |||| ||   |||||||||||| ||||||||||||||||||| |||||   | |||||||||| ||    
T  13515880 tacaatattagaatctaaggtttagactgttttcatgacatc--ttgagaatgatctcaagaggggtatttatagctctttgtgggattgtttttacctg 13515977  T
Q  248 acttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggc 346  Q
    |||||||||||||| ||| | || ||||||||||||||||||||||||||| ||| |||||  |||||||| | ||||||| | || ||| | |||||||    
T  13515978 acttaagccccaagaaagttgggctttaagtctttttactaagctctagatgcttttagaaattagttgagacggcgcctctgaaagggcacacctaggc 13516077  T
Q  347 ctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    |||| ||||||||||||||| |||||||||||||||| | ||||||||| | || |||||| ||| ||| |||||    
T  13516078 ctcatgagcccttctggaggacgcctaagcctttctatatggcattcgagctcttaggaatatatcgacggtcca 13516152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 165 - 421
Target Start/End: Original strand, 19937471 - 19937728
Alignment:
Q  165 tagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaa 264  Q
    ||||||||| |||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||   |||||||||   ||||||||||||||||||||    
T  19937471 tagggtttagactgtttatgtgatgccttgggaatgatcccaagagggttatttatagccctttgtgggcttgttttcgtgtgacttaagccccaagcaa 19937570  T
Q  265 gctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcctcaggagcccttctgg 363  Q
    | | ||  |||  |  |||||||||| | ||||| ||||||||||||||||||||| ||||||| |||| |||||||||| |||  |||||||||||| |    
T  19937571 gttgggccttacttaattttactaagttgtagatgcttctagaagctagttgaggcggcgcctctggaagggcgcgcctatgccgtaggagcccttctag 19937670  T
Q  364 agggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    |||||||  ||||||||||| |||| |||||| ||||  ||||| |||| || |||||    
T  19937671 agggcgctcaagcctttctatagggtattcgagcccttgggaatatattaacggtcca 19937728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 150 - 422
Target Start/End: Original strand, 44900083 - 44900356
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    ||||||| ||||| |||| |||||   |||||| | ||||| |||||||||||||||||||||||||||||| ||||||    |||||||||   |||||    
T  44900083 tacaatattagaaactagagtttagtttgtttaagtgatgccttgagaatgatcccaagaggggtatttataaccctttatgggcttgttttcgtgtgac 44900182  T
Q  250 ttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcct 348  Q
    ||||| |||||||||||| ||  ||||||| |||||||| ||||||||| ||||||||||||| ||||||| ||||||| | || ||| |||||||||||    
T  44900183 ttaagtcccaagcaagcttggccttaagtcattttactatgctctagatgcttctagaagctaattgaggcggcgcctctgtaagggcacgcctaggcct 44900282  T
Q  349 caggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtccaa 422  Q
     |||||| | |||  | | ||||||||||||||||||||||||||||  |||  ||||| ||||||| ||||||    
T  44900283 aaggagcacctctaaaagacgcctaagcctttctagagggcattcgagtcctttggaatatattgacagtccaa 44900356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 150 - 407
Target Start/End: Complemental strand, 2548664 - 2548406
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    ||||||||| | ||||||| |||| ||| |||||||||||  |||||||| ||| |||  | |||||||||||||   |    ||||||||| |||| ||    
T  2548664 tacaataattgtatctaggatttagactatttatgagatgtcttgagaataatctcaatggtggtatttatagcctactatgggcttgttttcacgtaac 2548565  T
Q  250 ttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcct 348  Q
    ||  |||||||||||||| ||  ||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||| ||||| |||||||||    
T  2548564 ttgtgccccaagcaagctgggccttatgtctttttactaagctctagatgcttctagaagcaagttgaggcggcgcctctggaagggcgcacctaggcct 2548465  T
Q  349 caggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaat 407  Q
    |||||||| ||||||||||||| | |||||||||||| |||||| || |||| ||||||    
T  2548464 caggagccgttctggagggcgcttgagcctttctagaaggcatttgagcccttaggaat 2548406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 161 - 388
Target Start/End: Complemental strand, 10291840 - 10291611
Alignment:
Q  161 aatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaag-cttgtttttacgtgacttaagcccca 259  Q
    ||||||||||||| ||||||||| |||||| | ||||||||||||||||| ||||||||| |||||||    | ||||||||  || ||||||||||| |    
T  10291840 aatctagggtttagactgtttatcagatgcctcgagaatgatcccaagagtggtatttatggcccttttgtggacttgttttagcgcgacttaagcccta 10291741  T
Q  260 agcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcctcaggagccct 358  Q
    |||||||| || ||||||||||||||||  | ||| ||| |||| ||||| | | | ||||  |||| | |||| |||| | |||||| ||| |||||||    
T  10291740 agcaagctgggctttaagtctttttactcggttctggatgcttccagaagttggctaaggcgacgccccaggaagggcgtgtctaggcttcaagagccct 10291641  T
Q  359 tctggagggcgcctaagcctttctagaggg 388  Q
    ||| ||||| |||| ||| |||||||||||    
T  10291640 tctagagggtgcctgagcatttctagaggg 10291611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 13794391 - 13794513
Alignment:
Q  206 aagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttt-tactaagctctagatacttct 304  Q
    |||||||||||||||| || |||||  ||||||||   |||||||||||||||||| |||||  | |||||||||||| |||||||||||| ||||||||    
T  13794391 aagaggggtatttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttct 13794490  T
Q  305 agaagctagttgaggcagcgcct 327  Q
    ||||||||| |||||| ||||||    
T  13794491 agaagctagctgaggcggcgcct 13794513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 32315778 - 32315929
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||||||||| ||||||||| | |||||||||| | ||||||  |  ||||| ||||||||| ||||||| |  |||||||||||||||||   ||    
T  32315778 tgtacttgcagtgagtacaataatcgtatctagggtt-agactgttgttttgatgccttgagaatggtcccaagggtcgtatttatagccctttgtgggc 32315876  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttact 287  Q
    |||||||  |||| |||| |||||||||||||| |  |||| |||||||||||    
T  32315877 ttgttttagcgtggcttaggccccaagcaagctggactttaggtctttttact 32315929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 150 - 291
Target Start/End: Complemental strand, 44899055 - 44898916
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    ||||||| ||||| ||| ||||||   |||||| | ||||| |||||||||||||||||||||||| |  |||||||||    |||||||||  ||| ||    
T  44899055 tacaatattagaaactacggtttagtttgtttaagtgatgccttgagaatgatcccaagaggggtact--tagccctttatgggcttgttttcgcgttac 44898958  T
Q  250 ttaagccccaagcaagctaggttttaagtctttttactaagc 291  Q
    ||||||||||| |||| | ||  ||||||| |||||||||||    
T  44898957 ttaagccccaaacaagttgggccttaagtcattttactaagc 44898916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 407
Target Start/End: Original strand, 31510815 - 31510884
Alignment:
Q  338 cgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaat 407  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||  ||||||||||  |||| ||||||    
T  31510815 cgcctaggctttaggagcccttctggagggcacctaagcctttctgaagggcattcgtgcccttaggaat 31510884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 13304997 - 13305128
Alignment:
Q  153 aataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgactta 252  Q
    |||| ||||| ||||||||||  |||||  || ||||  |||||||||||||||| |  || |||||||||||||||   |||||||||  |||||||||    
T  13304997 aatattagaaactagggtttagtctgttgttgtgatgtcttgagaatgatcccaatataggcatttatagccctttgtgggcttgttttcgcgtgactta 13305096  T
Q  253 agccccaagcaagct-aggttttaagtctttt 283  Q
    |||| |||| ||| | || |||||||||||||    
T  13305097 agcctcaagtaagatgagtttttaagtctttt 13305128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 392
Target Start/End: Complemental strand, 17369401 - 17369219
Alignment:
Q  212 ggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagct 311  Q
    |||||||||||||||| |  ||||||||||  | ||||| ||| |||||||||  | ||  ||||||| |||||||  ||||||||   ||||||||||     
T  17369401 ggtatttatagcccttcgtgagcttgttttctcatgactaaagtcccaagcaacttgggccttaagtcattttactgtgctctagaagtttctagaagcc 17369302  T
Q  312 agttgaggcagcgcctc--gggaaggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcatt 392  Q
     |||||||  |||||||  ||| | |||||||||| | | || | |||||||||||||||||  |||||||||  ||||||||    
T  17369301 tgttgaggtggcgcctctaggggaagcgcgcctagcctttagaaccccttctggagggcgcccgagcctttctgaagggcatt 17369219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 308
Target Start/End: Original strand, 3531387 - 3531527
Alignment:
Q  167 gggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagc 266  Q
    ||||||| |||||||||||||||| |||||||||||| |||| | ||||||||||| |  |||   ||||||||   |||||||||| ||  ||| ||||    
T  3531387 gggtttagactgtttatgagatgccttgagaatgatctcaag-gtggtatttatagtctgttgtgtgcttgtttcagcgtgacttaaaccttaagtaagc 3531485  T
Q  267 taggttttaagtctttttactaagctctagatacttctagaa 308  Q
    | || |||| |||||||  || | |||||||| |||||||||    
T  3531486 tgggctttaggtcttttacctgatctctagatgcttctagaa 3531527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 13312327 - 13312376
Alignment:
Q  192 ttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttt 241  Q
    |||||||||||||||| |||||||||||||||| ||||  ||||||||||    
T  13312327 ttgagaatgatcccaaaaggggtatttatagccgtttgtgagcttgtttt 13312376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 12495176 - 12495084
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctt 227  Q
    |||| ||||||||| | ||||| ||||| ||||| ||||  ||||||  | || || |||||||||||| |||||||||||||||| ||||||    
T  12495176 tgtacttgcagtgagtgcaatattagaaactaggatttagtctgttttcgtgaagccttgagaatgatctcaagaggggtatttatcgccctt 12495084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 13794508 - 13794592
Alignment:
Q  337 gcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    |||||||||||| ||||||| ||  ||||||||||||| || |||| |||||| || || |||| |||||| ||||||| |||||    
T  13794508 gcgcctaggccttaggagccgttacggagggcgcctaaacccttctggagggcgtttgagcccttaggaatatattgacggtcca 13794592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 14438374 - 14438425
Alignment:
Q  336 cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagg 387  Q
    |||||||||  ||||||||||||||||||||||| || ||||||| ||||||    
T  14438374 cgcgcctagatctcaggagcccttctggagggcgtctgagcctttttagagg 14438425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 29480208 - 29480135
Alignment:
Q  348 tcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    |||||||||||||||||| |||||| ||||||| |||||| | |||   |||| |||||| |||| ||||||||    
T  29480208 tcaggagcccttctggagagcgcctgagcctttatagaggactttcaggcccttaggaatatattaactgtcca 29480135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 31513260 - 31513353
Alignment:
Q  233 gcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcc 326  Q
    |||||||||  |||| ||||||||||||||||  | ||  ||||||||||| ||   ||||||||  |||||||||||  ||||||||||||||    
T  31513260 gcttgttttctcgtggcttaagccccaagcaacttgggccttaagtcttttcacagtgctctagaagcttctagaagcatgttgaggcagcgcc 31513353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 26383902 - 26383866
Alignment:
Q  353 agcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  26383902 agcccttctggagggcgtctaagcccttctagagggc 26383866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 34602117 - 34602077
Alignment:
Q  329 gggaaggcgcgcctaggcctcaggagcccttctggagggcg 369  Q
    |||| ||||||||||||||||| ||||||||||| ||||||    
T  34602117 gggagggcgcgcctaggcctcatgagcccttctgaagggcg 34602077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 133 - 421
Target Start/End: Original strand, 30996936 - 30997220
Alignment:
Q  133 attgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaa 232  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||   ||||| || ||||||||||||||||||  ||||||||||||||||||||||         
T  30996936 attgtacttgcagtaagtacaatattagaaactagggtttagtttgtttttgtgatgctttgagaatgatctaaagaggggtatttatagcccttcattg 30997035  T
Q  233 gcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagct-agttgaggcagcgcctcggg 331  Q
    ||||||||||||||||||||||||||      ||| ||| |||||||||||||||||||||||||| |||||||||||| | | ||||| ||||||| ||    
T  30997036 gcttgtttttacgtgacttaagcccc------gctgggtcttaagtctttttactaagctctagatgcttctagaagcttaatagaggcggcgcctctgg 30997129  T
Q  332 aagg-cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    |||| ||| |||||  |||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||| || |||||    
T  30997130 aagggcgcacctagatctcatgagcccttctggagggcgccaaagcctttctagagggcattcgagcccttaggaatatattaacggtcca 30997220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 135 - 389
Target Start/End: Complemental strand, 34240973 - 34240718
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||||||||| |||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||   ||    
T  34240973 tgtacttgcagtgagtacaataatagaatctagggtttagactgtttgtgtgatgccttgagaatgatcccaagaggggtatttatagccctttgtgggc 34240874  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa- 333  Q
    ||||||  |||||||||||||||||| ||| || || |||| ||||||||||   | ||||||| ||||||||  || | | |||| || |||| ||||     
T  34240873 ttgtttccacgtgacttaagccccaaccaatctgggctttaggtctttttacccggttctagatgcttctagacactggctaaggcggcacctctggaag 34240774  T
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||| |||||||    
T  34240773 ggcgcgcctgggactcaggagcccttctggagggcacctaagcctttccagagggc 34240718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 135 - 414
Target Start/End: Complemental strand, 24115429 - 24115149
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||| |||| |||| ||  |||||| |||||||||||||| |     |    
T  24115429 tgtacttgcagtgagtacaatagtagaatctagggtttagactgtttatgagatgccttgataatgctcttaagaggtgtatttatagccctctatggtc 24115330  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa- 333  Q
    |||||||  |||||||||||||  ||| ||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||  |||||||  |||     
T  24115329 ttgttttctcgtgacttaagccttaagtaagctgggtcttaagtcttattactaagctctagatgcttctagaagctagttgaggtggcgcctcttgaag 24115230  T
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattga 414  Q
    |||| ||| || | ||||||||| ||||||||||| ||||||||||||  ||||| | || | |||| |||||| ||||||    
T  24115229 ggcgtgccaagacttcaggagcctttctggagggcacctaagcctttcccgagggtactctagcccttaggaatatattga 24115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 272 - 421
Target Start/End: Complemental strand, 38667905 - 38667755
Alignment:
Q  272 tttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaagg-cgcgcctaggcctcaggagcccttctggagggcgc 370  Q
    |||||| | ||||||| ||||||| |||||||||||||||||||||||| || |||| | |||| |||||| |||||||| |||||||||||||||||||    
T  38667905 tttaagacattttactgagctctatatacttctagaagctagttgaggccgcccctctgaaagggcgcgccaaggcctcatgagcccttctggagggcgc 38667806  T
Q  371 ctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
     ||||||||||||||||||||||||||||| |||||| ||| ||| |||||    
T  38667805 ataagcctttctagagggcattcgaacccttaggaatatatggacggtcca 38667755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 135 - 414
Target Start/End: Complemental strand, 24119067 - 24118787
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||||||||| | ||||| |||||||||||||||| ||| |||||||||||| ||||||||| || ||||||| |||||||||||||| |    ||    
T  24119067 tgtacttgcagtgagtgcaatagtagaatctagggtttagactatttatgagatgccttgagaatgctctcaagaggtgtatttatagccctctatgggc 24118968  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa- 333  Q
    |||||||  | |||||||| ||| | ||||| | |   ||  ||||||||||| |||| |   |  ||||||||| ||||||||||  |||||| ||||     
T  24118967 ttgttttctcatgacttaatccctaggcaagttggaccttgggtctttttactcagctgtcattggttctagaagatagttgaggcgacgcctctggaag 24118868  T
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattga 414  Q
    ||||||||||||| ||| ||||| || |||||||||  ||||||||||||||||| |||||| |||| |||||| ||||||    
T  24118867 ggcgcgcctaggcttcatgagcctttatggagggcgtgtaagcctttctagagggtattcgagcccttaggaatatattga 24118787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 382
Target Start/End: Original strand, 11783931 - 11784152
Alignment:
Q  164 ctagggttta-aactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagc 262  Q
    |||||||||| ||||||||| | ||||||| ||||||| || ||||||||||||||||| |||||||   | |||| ||   ||||||||||||||||||    
T  11783931 ctagggtttagaactgtttaagtgatgctt-gagaatgctctcaagaggggtatttatatccctttgtgggtttgtattcctgtgacttaagccccaagc 11784029  T
Q  263 aagct-aggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcc--tcgggaaggcgcgcctaggcctcaggagccctt 359  Q
    ||  | || ||| ||||| ||||||   |||||||||||||||||||||  |||||||| |||||  | ||||    |||||||| | |||| |||||||    
T  11784030 aactttagctttaaagtcattttacagtgctctagatacttctagaagcctgttgaggcggcgccctttgggagaatgcgcctagccttcagaagccctt 11784129  T
Q  360 ctggagggcgcctaagcctttct 382  Q
    |||||||||||||||||||||||    
T  11784130 ctggagggcgcctaagcctttct 11784152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 17466161 - 17465991
Alignment:
Q  142 gcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtattt-atagccctttgaaagcttgttt 240  Q
    ||||||| ||||||| ||||| |||| |||||  || ||||||  |||||||| |||||||| |||||||| ||||| ||| |  ||||   ||||||||    
T  17466161 gcagtgagtacaatattagaaactagagtttagtctttttatgtcatgctttgggaatgatctcaagagggatattttataactttttgtgggcttgttt 17466062  T
Q  241 ttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagct 311  Q
       |||||||||||||||||||||||| || |||| ||||||||||  || ||||||| |||||| |||||    
T  17466061 cagcgtgacttaagccccaagcaagctgggctttaggtctttttacccagttctagatgcttctataagct 17465991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 420
Target Start/End: Original strand, 44134085 - 44134362
Alignment:
Q  140 ttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtt 239  Q
    ||||||||| |||||||||||||| |||| |||| | | |||||   |||| | |||||||||| ||| || |||||||||||| |||||   ||  | |    
T  44134085 ttgcagtgagtacaataatagaatttaggatttagattatttatataatgcctagagaatgatctcaatagtggtatttatagctctttgtgggcaggct 44134184  T
Q  240 tttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaaggcgcg 339  Q
       ||||||||||||| |||||||||||||| || | || |||||||   | |||||||  ||||||||||    | |||| ||||||| ||| || |||    
T  44134185 acaacgtgacttaagctccaagcaagctaggctt-aggtatttttacatggttctagatgtttctagaagccgactaaggcggcgcctctggaggg-gcg 44134282  T
Q  340 cctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcc 420  Q
       |||| ||||||||||||||||||||| ||||| ||||||||||| || ||   ||||| |||||| ||||||| ||||    
T  44134283 tgcaggc-tcaggagcccttctggagggcacctaaacctttctagagtgcttttagacccttaggaatatattgacggtcc 44134362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 15568555 - 15568509
Alignment:
Q  337 gcgcctaggcctcaggagcccttctggagggcgcctaagcctttcta 383  Q
    |||| ||| |||||||||||||||||||| |||||| ||||||||||    
T  15568555 gcgcttagtcctcaggagcccttctggagagcgccttagcctttcta 15568509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 16077799 - 16077860
Alignment:
Q  163 tctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    ||||||||||| |||| | || |||||| |||||||||||| ||||||  ||||||||||||    
T  16077799 tctagggtttagactgataattagatgccttgagaatgatctcaagagtagtatttatagcc 16077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 17526798 - 17526834
Alignment:
Q  353 agcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  17526798 agcccttctggagggcgtctaagcccttctagagggc 17526834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 28236088 - 28235992
Alignment:
Q  168 ggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaa 264  Q
    ||||||| |||||| |  ||| ||||||||||||||  ||||||||||||||||  | ||   |||||||| ||| |||||||||  ||||||||||    
T  28236088 ggtttaatctgtttttacgattctttgagaatgatcttaagaggggtatttataatctttcttaagcttgtatttccgtgacttagaccccaagcaa 28235992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 35520855 - 35520903
Alignment:
Q  373 aagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    ||||||||||||||||||||||| |||  |||||| ||||||| |||||    
T  35520855 aagcctttctagagggcattcgagcccctaggaatatattgacggtcca 35520903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 150 - 400
Target Start/End: Complemental strand, 14510405 - 14510152
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatccc--aagaggggtatttatagccctttgaaagcttgtttttacgtg 247  Q
    |||||||||||||||||||||||| ||||||||| | || | ||||||||||| ||  | | | ||||||||||||||||||    ||||||||||||      
T  14510405 tacaataatagaatctagggtttagactgtttattaaataccttgagaatgattccatatgggtggtatttatagccctttgtggacttgtttttacgaa 14510306  T
Q  248 acttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaag-gcgcgcctaggc 346  Q
    ||||||||||||||||| || ||   || |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| || |||||||||    
T  14510305 acttaagccccaagcaaactgggccctatgtctttttactaagctctagatgcttctagaagctagttgaggcggcgcctctggaagagcacgcctaggc 14510206  T
Q  347 ctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccct 400  Q
    ||||||||||||| |||||||||| |||||||||||| | ||||||||| ||||    
T  14510205 ctcaggagcccttatggagggcgcttaagcctttctaaaaggcattcgagccct 14510152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 135 - 421
Target Start/End: Original strand, 21384080 - 21384367
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||||| ||| |||||||||| ||||||||||||  ||||| | || ||||| ||| ||||||||||||||| |||| |||||||| |||||  ||    
T  21384080 tgtacttgcaatgagtacaataataaaatctagggtttttactgtgtttgtgatgccttgggaatgatcccaagagaggtaattatagccttttgagggc 21384179  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagc-tctagatacttctagaagctagttgaggcagcgcctcgggaa 333  Q
    ||||||| ||| ||||||||||||||||||| |  | |||| ||||||||| |  || ||||||| |||||||||||| | | |||| |||||||  |||    
T  21384180 ttgttttaacgcgacttaagccccaagcaagatgagctttatgtcttttta-tccgcttctagatgcttctagaagctggctaaggcggcgcctctagaa 21384278  T
Q  334 -ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
     |||| |||||| ||| ||||||| |||||||||||||||||||||||||||| ||| |||  ||||| | |||| ||||||| |||||    
T  21384279 gggcgtgcctagtccttaggagccattctggagggcgcctaagcctttctagaaggctttcagacccttaagaatatattgacggtcca 21384367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 135 - 389
Target Start/End: Complemental strand, 24123141 - 24122891
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||| ||||| ||||||| |||||||||||||||  ||| ||| || ||||| ||||||||||||| ||||||||||||||||||||||||   |     
T  24123141 tgtacttgtagtgagtacaatattagaatctagggttttgactatttttgtgatgccttgagaatgatcctaagaggggtatttatagccctttgtggga 24123042  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaag 334  Q
    ||||||   ||| |||||| ||||||||||| | ||  |||||     |||| ||||||||||| ||||||| |||| ||| |||| | ||||| |||||    
T  24123041 ttgtttcagcgtaacttaatccccaagcaagttgggccttaag-----ttaccaagctctagatgcttctaggagctggttaaggcggtgcctctggaag 24122947  T
Q  335 -gcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
     ||| || ||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  24122946 agcgtgcttagacctcaagagcccttctggagggcgcctaagtctttctagagggc 24122891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 177 - 359
Target Start/End: Original strand, 10344984 - 10345167
Alignment:
Q  177 tgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaa 276  Q
    |||||| ||||| | |||||||| |||||||| | ||||||||||  ||||||   |||||||||||| | |||||| || |||||||||| ||  ||||    
T  10344984 tgtttacgagataccttgagaataatcccaagggtggtatttataatcctttgtgggcttgtttttacctaacttaatccacaagcaagctgggccttaa 10345083  T
Q  277 gtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcctcaggagccctt 359  Q
    || ||||||||||||||||||| |||||||||| |||||||| | |||||||  ||| ||||| ||||||||||| ||||||||    
T  10345084 gtatttttactaagctctagatgcttctagaaggtagttgagacggcgcctctagaagggcgcacctaggcctcatgagccctt 10345167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 23107843 - 23107766
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctt 227  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||||| | || |||||||||||||||||||||||    
T  23107843 tacaataatagaatctagggtttacactgtttatgtgatgcattgagaaagctctcaagaggggtatttatagccctt 23107766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 24122828 - 24122707
Alignment:
Q  173 aaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggtt 272  Q
    |||||||||||| ||||| || | ||||||||||||| ||||||||||||| ||||    ||||||||   |||||||||| ||||||||||| | |||     
T  24122828 aaactgtttatgtgatgcctttataatgatcccaagatgggtatttatagctctttatgggcttgtttcagcgtgacttaatccccaagcaagttgggtc 24122729  T
Q  273 ttaagtctttttactaagctct 294  Q
    ||||||| |||||| |||||||    
T  24122728 ttaagtcattttaccaagctct 24122707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 133 - 286
Target Start/End: Original strand, 1699522 - 1699672
Alignment:
Q  133 attgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaa 232  Q
    |||||| ||||||| |||||||||   |||||||||||||| |||||||  | ||| | || ||||||||| |||| ||||| ||||||||||||||       
T  1699522 attgtacttgcagtaaatacaata---gaatctagggtttagactgtttgcgtgataccttaagaatgatctcaagtggggtgtttatagccctttgtgg 1699618  T
Q  233 gcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttac 286  Q
     ||||||||  |||||| |||||| |||||||| | || |||| ||||||||||    
T  1699619 acttgttttagcgtgacctaagcctcaagcaagttgggctttaggtctttttac 1699672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 24122043 - 24121956
Alignment:
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    ||||||||||||||||| || ||| |||||||| ||||||||||| |||||||||| |||  ||||| |||||| ||||||| |||||    
T  24122043 ggcgcgcctaggcctcatgatcccatctggaggacgcctaagcctatctagagggctttcagacccttaggaatatattgacggtcca 24121956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 34445757 - 34445903
Alignment:
Q  140 ttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgat-cccaagaggggtatttatagccctttgaaagcttgt 238  Q
    ||||| ||| |||||||||||||| ||||||||  ||||||| || ||||| ||| ||||||| |||||||| |||||| |||||||||||   ||||      
T  34445757 ttgcaatgagtacaataatagaatatagggttt-gactgtttttgtgatgccttgggaatgatccccaagagaggtattcatagccctttgtgggcttcg 34445855  T
Q  239 ttttacgtgacttaagccccaagcaagctaggttttaagtctttttac 286  Q
    |||  | |||||||||||||||||||| | || |||| ||||||||||    
T  34445856 tttagcatgacttaagccccaagcaagttgggctttaggtctttttac 34445903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 24250902 - 24250956
Alignment:
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagaggg 388  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  24250902 ggcgcgcctaggcctcaggagcccttctggagggcgtttgagcctttctagaggg 24250956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 20763904 - 20763849
Alignment:
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||    
T  20763904 ggcgcgcataggcctcaggagcccttctagagggcgtctgagcctttctagagggc 20763849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 2264854 - 2264763
Alignment:
Q  132 tattgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagc 223  Q
    |||||||||||| |||| ||||||||| ||||||||| |||| |||||||||  ||| | |||||||||||  |||  ||||||| ||||||    
T  2264854 tattgtatttgcggtgagtacaataatcgaatctaggatttagactgtttatctgatcccttgagaatgatttcaaatggggtatgtatagc 2264763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 8338174 - 8338264
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    ||||| || |||||| ||||||| ||||| ||| ||||||  || ||| || ||||| ||||||||| || ||||||||||||||||||||    
T  8338174 ttgtaatttcagtgagtacaatattagaaactaaggtttagtctatttttgtgatgccttgagaatgttctcaagaggggtatttatagcc 8338264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 389
Target Start/End: Original strand, 34445959 - 34445997
Alignment:
Q  351 ggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  34445959 ggagcccttctggagggcacctaagcctttctagagggc 34445997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 17536675 - 17536728
Alignment:
Q  337 gcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggca 390  Q
    |||||||||||||||||   ||||||||||||| || || ||||||||||||||    
T  17536675 gcgcctaggcctcaggaattcttctggagggcgtctcagactttctagagggca 17536728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 16362777 - 16362678
Alignment:
Q  164 ctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagca 263  Q
    ||||||||||| || |||| |  |||||||||||||| || |||| |||||| ||||||||||| |    ||||||||  ||||||||||| ||||||||    
T  16362777 ctagggtttaatctatttaggtcatgctttgagaatg-tctcaagcggggtaattatagcccttcggggtcttgttttcccgtgacttaagtcccaagca 16362679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 20718487 - 20718559
Alignment:
Q  192 ttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaa 264  Q
    ||||||||| || ||||||| |||||| || ||||  |   |||||||||| |||||||||||||||||||||    
T  20718487 ttgagaatgctctcaagaggtgtatttctatccctccgttggcttgttttttcgtgacttaagccccaagcaa 20718559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 131 - 386
Target Start/End: Complemental strand, 32889805 - 32889548
Alignment:
Q  131 atattgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaa-gaggggtatttatagccctttg 229  Q
    |||||||| |||||  || |||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||    
T  32889805 atattgtacttgcaccgagtacaataatagaatatagggtttagactgtttatgcgatgccttgagaatgatcctaaagaggggtatttatagccctttg 32889706  T
Q  230 aaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcg 329  Q
      ||||||||||| ||| |||||||| | ||| ||||| ||| ||||||| |||||| ||||||||||| |||||||||||| ||| |||| |||||||     
T  32889705 tgagcttgtttttgcgtaacttaagctcaaagaaagctgggtcttaagtcattttaccaagctctagatgcttctagaagctggttaaggcggcgcctct 32889606  T
Q  330 ggaagg-cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagag 386  Q
    |||||| ||||||||   | || ||||||||||||||| || ||||||||||||||||    
T  32889605 ggaaggacgcgcctaaatcccatgagcccttctggaggacgtctaagcctttctagag 32889548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 158 - 389
Target Start/End: Complemental strand, 19276595 - 19276361
Alignment:
Q  158 tagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc-ttgttttta-cgtgacttaagc 255  Q
    |||||||||||||||| |||||||||||||||| || |||||||||  ||||| |||||||||||||||||    || ||||||||| ||| ||||||||    
T  19276595 tagaatctagggtttagactgtttatgagatgccttcagaatgatcgtaagagtggtatttatagccctttctgggctttgtttttagcgtaacttaagc 19276496  T
Q  256 cccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaagg---cgcgcctaggcctcagg 352  Q
    ||||| || | | || |||| |||||||||| | | ||||||| |||||||||| |||||||||| |||  |||  ||||   |||||||| |||||| |    
T  19276495 cccaaacatgttgggctttaggtctttttaccaggttctagatgcttctagaagttagttgaggcggcg--tcgttaaggggacgcgcctaagcctcatg 19276398  T
Q  353 agcccttctggagggcgcctaagcctttctagagggc 389  Q
    |||||||||||||||||||||| |||| |||||||||    
T  19276397 agcccttctggagggcgcctaaaccttcctagagggc 19276361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 134 - 400
Target Start/End: Complemental strand, 28426611 - 28426346
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaag 233  Q
    ||||| |||| |||| || ||||||||||| ||||||||| |||||||||||||||  |||||| || || ||||||| ||||||| || | | ||   |    
T  28426611 ttgtacttgcggtgagtataataatagaatttagggtttagactgtttatgagatgtcttgagagtgctctcaagaggtgtatttacagtcatctgtggg 28426512  T
Q  234 cttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa 333  Q
    |||| |||  || |||||||  |||||| ||  | || |||||||||||||||| || ||||||| |||||||||| |||||||||| |||||| ||||     
T  28426511 cttggtttcccgagacttaaaacccaagtaatgtgggctttaagtctttttactgagttctagatgcttctagaagttagttgaggcggcgcct-gggag 28426413  T
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccct 400  Q
     || || ||| |||| | ||||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  28426412 agcacgtctaagccttaagagcccttctggaggacgccttagcctttctagagggcattcgagccct 28426346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 16139711 - 16139843
Alignment:
Q  133 attgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaa 232  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||  | ||||||||||||||||||       
T  16139711 attgtatttgcagtgagtacaatattagaatctagggtttagactgtctatgagatgccttgagaatgatcccaaacgtggtatttatagccctttgtgg 16139810  T
Q  233 gcttgtttttacgtgacttaagccccaagcaag 265  Q
    | |||||||  ||||||||||||||||||||||    
T  16139811 gattgttttagcgtgacttaagccccaagcaag 16139843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 135 - 285
Target Start/End: Complemental strand, 7434773 - 7434623
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||| ||||| ||||| |||||||||||||||||  |||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||  |||    
T  7434773 tgtaattgtagtgagtacaacaatagaatctagggttttgactgtttatgtgatgccttgagaatgatcccaagagaggtatttatagcactttgtgagc 7434674  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtcttttta 285  Q
    ||| ||   |||||||||||||||||||||||| || |||| |||||||||    
T  7434673 ttgcttcagcgtgacttaagccccaagcaagctgggctttaggtcttttta 7434623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 16233714 - 16233841
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagagggg-tatttatagccctttgaaag 233  Q
    |||| ||||| ||| |||||||  |||| ||| ||||||  ||||||||| ||||| ||||||||||| | |||||||| ||||||||||||||||  ||    
T  16233714 tgtacttgcactgagtacaatataagaaactacggtttagtctgtttatgtgatgcattgagaatgattctaagagggggtatttatagccctttgtgag 16233813  T
Q  234 cttgtttttacgtgacttaagccccaag 261  Q
    ||||||||| ||||||||||||| ||||    
T  16233814 cttgtttttgcgtgacttaagcctcaag 16233841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 806124 - 806050
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||    
T  806124 tacaataatagaatctagggtttagactgtttatgtgatgccttgagaatgctcctaagagtggtatttatagcc 806050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 7770460 - 7770557
Alignment:
Q  133 attgtatttgcagtgaatacaataatagaatctagggtttaa-actgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttg 229  Q
    |||||| ||||||||| |||||||||| ||| |||||||| | || ||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  7770460 attgtacttgcagtgagtacaataatataatatagggttttagaccgttaatgagatgccttgagaatgatcccaagagtggtatttatagccttttg 7770557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 400
Target Start/End: Original strand, 30610539 - 30610699
Alignment:
Q  244 cgtgacttaagccccaagcaagctaggttttaagtctttttactaag----ctctagatacttctagaagctagttgaggcagcgcctcgggaaggcgcg 339  Q
    ||||||||||| ||||||||||||  |   ||||||||||||||||     ||||||||| |||||||||||||||||||| | | ||  ||||||||||    
T  30610539 cgtgacttaagtcccaagcaagctgaggcataagtctttttactaattaaactctagatatttctagaagctagttgaggcggtgtctttggaaggcgcg 30610638  T
Q  340 cctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccct 400  Q
     | || ||||||| ||||||  |||||||||| || ||||||||||  |||||||| ||||    
T  30610639 tccagacctcaggtgcccttacggagggcgccaaaacctttctagaaagcattcgagccct 30610699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 11509196 - 11509265
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcc 204  Q
    |||| |||| |||| |||||||||||||||||| ||||||||||||||||| |||  |||||||||||||    
T  11509196 tgtacttgcggtgagtacaataatagaatctagagtttaaactgtttatgatatgtcttgagaatgatcc 11509265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 30554243 - 30554166
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctt 227  Q
    ||||||||||||||||||||||||  ||||||| | ||||| ||||||||  ||  ||||||||||||||||||||||    
T  30554243 tacaataatagaatctagggtttaggctgtttaggtgatgccttgagaatactctaaagaggggtatttatagccctt 30554166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 809576 - 809502
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    |||||||||||||||||||||||| | || ||||| ||||| || |||||| |||||| || |||||||||||||    
T  809576 tacaataatagaatctagggtttagattggttatgtgatgccttcagaatgctcccaaaagtggtatttatagcc 809502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 14753866 - 14753765
Alignment:
Q  164 ctagggttta-aactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagc 262  Q
    |||||||||| ||||| ||| | ||| | ||||||||| || |||||||||||||||||||||||     |||||| ||| |||||||||||||||||||    
T  14753866 ctagggtttagaactgcttaggtgataccttgagaatgctctcaagaggggtatttatagcccttcatgggcttgtatttccgtgacttaagccccaagc 14753767  T
Q  263 aa 264  Q
    ||    
T  14753766 aa 14753765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 14064299 - 14064244
Alignment:
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||| || |||||    
T  14064299 ggcgcacctaggcctcaggatcccttctggagggcgtctgagcctttttaaagggc 14064244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 14259529 - 14259619
Alignment:
Q  133 attgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    |||||| |||||| || ||||||||| | |||||||||||| ||| ||| |||||||| || ||||| ||||||||   |||||||||||||    
T  14259529 attgtacttgcag-gagtacaataattgtatctagggtttagactatttttgagatgccttaagaattatcccaaggatggtatttatagcc 14259619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 131 - 421
Target Start/End: Complemental strand, 12195817 - 12195527
Alignment:
Q  131 atattgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctt-tg 229  Q
    |||||| | ||||| ||| |||||||||| |||||||||| || | |||||||||||||  ||||||||| || ||||||| |||||||||||||   ||    
T  12195817 atattgcacttgcactgagtacaataataaaatctagggtctatattgtttatgagatgtcttgagaatgctctcaagaggtgtatttatagcccccgtg 12195718  T
Q  230 aaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcg 329  Q
     |  ||||||||   ||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||     
T  12195717 ga--cttgttttcttgtgacttaagccccaagcaagttgggttttaagtttttttactaagctctagatgcttctagaagctagttgaggcggcgcctct 12195620  T
Q  330 ggaa-ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
     ||| |||||||||||| |||||||||  ||   |||||||||||||||||| ||||||| ||| || |||| |||||| ||||||| |||||    
T  12195619 agaagggcgcgcctaggtctcaggagctttttcagagggcgcctaagcctttatagagggtatttgagcccttaggaatatattgacggtcca 12195527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 134 - 422
Target Start/End: Complemental strand, 25935369 - 25935080
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaag 233  Q
    ||||| ||||| ||| |||||||||||||||||||||||| || ||||||||||||  |||||||||||||  |||| || |||||||| ||||||   |    
T  25935369 ttgtacttgcaatgagtacaataatagaatctagggtttagaccgtttatgagatgacttgagaatgatcctgagagtggaatttatagtcctttgtggg 25935270  T
Q  234 cttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa 333  Q
     |||||||  ||||||||||||| ||||||||||  | |||| ||||||||||   | ||||||| ||||||||||||  || |||| ||||||| ||||    
T  25935269 tttgttttagcgtgacttaagcctcaagcaagctgagctttaggtctttttacgtggttctagatgcttctagaagctgattaaggcggcgcctctggaa 25935170  T
Q  334 -ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtccaa 422  Q
     ||||||||||||| ||  ||||||||||| |||||||||| ||||||||||||||| ||    |||| |||||| ||||||| ||||||    
T  25935169 tggcgcgcctaggcttcttgagcccttctgaagggcgcctatgcctttctagagggcttttaggcccttaggaatatattgacggtccaa 25935080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 141 - 421
Target Start/End: Original strand, 34050179 - 34050459
Alignment:
Q  141 tgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgttt 240  Q
    |||||||| ||||||| ||||| |||||||||| ||||||||||  ||||||||||||||||| |||| | ||||||||||| ||||||  |||||||||    
T  34050179 tgcagtgagtacaata-tagaaactagggtttagactgtttatgtaatgctttgagaatgatctcaagcgaggtatttatagtcctttgtgagcttgttt 34050277  T
Q  241 ttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctc-gggaaggcgcg 339  Q
    || |||||||||||||||||||||| | ||| ||||| | ||||||||| ||| |||| ||||||||| ||||||||||| |||| ||  ||| |  |||    
T  34050278 ttgcgtgacttaagccccaagcaagatgggtcttaagacattttactaaactccagatgcttctagaacctagttgaggcggcgcatcttggaggatgcg 34050377  T
Q  340 cctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
     |  ||||||| |||||||| || ||||||||| | |||||||||| |||| || | |||| |||||| ||||||| |||||    
T  34050378 tcctggcctcaagagcccttttgaagggcgcctgaacctttctagatggcagtcaagccctaaggaatatattgacggtcca 34050459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 140 - 267
Target Start/End: Complemental strand, 13857973 - 13857846
Alignment:
Q  140 ttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtt 239  Q
    ||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||   ||||||     
T  13857973 ttgcagtgagtacaataataaaatctagggtttagactgtttttgagatgctttgagaatgatcctaagggtggtatttatagccctttgtgggcttgtg 13857874  T
Q  240 tttacgtgacttaagccccaagcaagct 267  Q
    ||  ||||||||||||||||||||||||    
T  13857873 ttagcgtgacttaagccccaagcaagct 13857846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 140 - 267
Target Start/End: Complemental strand, 13869503 - 13869376
Alignment:
Q  140 ttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtt 239  Q
    |||| |||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||   ||||||     
T  13869503 ttgcggtgagtacaataataaaatttagggtttagactgtttatgagatgctttgagaatgatcctaagggtggtatttatagccctttgtgggcttgtg 13869404  T
Q  240 tttacgtgacttaagccccaagcaagct 267  Q
    || |||||||||||||||||||||||||    
T  13869403 ttaacgtgacttaagccccaagcaagct 13869376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 12194967 - 12194812
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||||||||| ||||||||||||||||  |||||| ||||||||||||||| ||| |||||| || ||||||| |||||||||||||| ||   ||    
T  12194967 tgtacttgcagtgagtacaataatagaatcttaggtttagactgtttatgagatgtttttagaatgctctcaagaggtgtatttatagccctctgtgggc 12194868  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaag 290  Q
    |||||||  |||| ||||||||||||| |||||  |  ||||||||||||||||||    
T  12194867 ttgttttctcgtggcttaagccccaagtaagctgcgccttaagtctttttactaag 12194812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 50051143 - 50051289
Alignment:
Q  140 ttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtt 239  Q
    |||||| || |||||||||||||||||||||||| ||| |||||   |||| | |||||||||| |||||| ||||||||||| ||||||   ||  | |    
T  50051143 ttgcagcgagtacaataatagaatctagggtttagactatttatataatgcctagagaatgatctcaagagtggtatttatagtcctttgtgggcaggct 50051242  T
Q  240 tttacgtgacttaagccccaagcaagctaggttttaagtctttttac 286  Q
       |||||||||||||||||||||||||||| |||| || |||||||    
T  50051243 acaacgtgacttaagccccaagcaagctaggctttaggtatttttac 50051289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 388
Target Start/End: Original strand, 36539474 - 36539617
Alignment:
Q  246 tgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaagg-cgcgcctag 344  Q
    |||||||| ||||||||||| | || |||| ||||||| | |  | ||||||| |||||||||||  | | |||  ||||||| |||||| |||||||||    
T  36539474 tgacttaaaccccaagcaagttgggctttaggtcttttaattcggttctagatgcttctagaagcatgctaaggtggcgcctctggaagggcgcgcctag 36539573  T
Q  345 gcctcaggagcccttctggagggcgcctaagcctttctagaggg 388  Q
    ||  |||||||||||| |||||||||||| ||||||||||||||    
T  36539574 gctccaggagcccttcgggagggcgcctacgcctttctagaggg 36539617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 287
Target Start/End: Original strand, 14002366 - 14002503
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    ||||||||| | ||||| |||||| |||||||||||||| | | |||| ||||| |||| | |||||||||||||  |||   |||||||||   |||||    
T  14002366 tacaataatcgtatctaaggtttagactgtttatgagatacctcgagactgatctcaagggtggtatttatagcctcttgtgtgcttgttttggtgtgac 14002465  T
Q  250 ttaagccccaagcaagctaggttttaagtctttttact 287  Q
    |||||||| ||||||||| || |||| |||||||||||    
T  14002466 ttaagccctaagcaagctgggctttaggtctttttact 14002503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 427
Target Start/End: Complemental strand, 12193658 - 12193518
Alignment:
Q  285 actaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttcta 383  Q
    |||||||||||||| |||||||||||| |||||||  ||||||| |||| ||||||||||    || |||||  ||| |||| | ||||||| |||||||    
T  12193658 actaagctctagatgcttctagaagcttgttgaggtggcgcctctggaagggcgcgccta---ttccggagcatttcgggagagtgcctaagactttcta 12193562  T
Q  384 gagggcattcgaaccctcaggaatgtattgactgtccaaatata 427  Q
    ||||| |||| | |||| || ||| ||||||| |||||||||||    
T  12193561 gagggtattctagcccttagaaatatattgacggtccaaatata 12193518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 387
Target Start/End: Original strand, 36543920 - 36544094
Alignment:
Q  214 tatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctag 313  Q
    ||||||||||| |||   ||||||||||  ||||||||||| |||||||||| | ||  |||||||||||||    | ||||||| |||||||||| | |    
T  36543920 tatttatagccttttatgagcttgttttagcgtgacttaaggcccaagcaagttgggcgttaagtctttttatccggttctagatgcttctagaagttgg 36544019  T
Q  314 ttgaggcagcgcctcgggaagg-cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagg 387  Q
     | ||   |||||||  ||||| ||| | ||||  ||||||||||||||  ||||||||||||||||||||||||    
T  36544020 ctaagatggcgcctctagaagggcgcacttaggtttcaggagcccttctaaagggcgcctaagcctttctagagg 36544094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 49022670 - 49022618
Alignment:
Q  337 gcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||    
T  49022670 gcgcctaagccttaggagcccttctggagggcgcttaaacctttctagagggc 49022618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 319
Target Start/End: Original strand, 17397711 - 17397870
Alignment:
Q  162 atctagggtttaa-actgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgt-ttttacgtgacttaagcccca 259  Q
    ||||||||||||  ||||||| || |||| ||| |||||| |||| |||||| ||||||||||| ||||   |||||| |||  | ||||||||||||||    
T  17397711 atctagggtttagtactgtttttgtgatgatttcagaatgctcccgagagggttatttatagccttttgtgggcttgtgtttcccatgacttaagcccca 17397810  T
Q  260 agcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgagg 319  Q
    ||||| |  ||  ||||||| |||||| |  |||||||| |||||||||||  |||||||    
T  17397811 agcaaccagggccttaagtcattttacaattctctagattcttctagaagcctgttgagg 17397870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 9157272 - 9157385
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    ||||| ||||||||||| |||||| ||| |||||| ||||  ||||||||| || ||||| || ||||||| || |||||   |||||| |||  |||||    
T  9157272 tacaacaatagaatctaaggtttagactctttatgtgatgtcttgagaatgctctcaagatggatatttattgctctttgtgggcttgtatttcggtgac 9157371  T
Q  250 ttaagccccaagca 263  Q
    |||| |||||||||    
T  9157372 ttaaaccccaagca 9157385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 12324606 - 12324553
Alignment:
Q  336 cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||| |||||| ||||||| ||||||||||| ||||||||||||| |||||    
T  12324606 cgcgcctgggcctctggagcccatctggagggcgtctaagcctttctaaagggc 12324553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 1676880 - 1676784
Alignment:
Q  168 ggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaa 264  Q
    |||||| | |||||||||||| | ||||||||| ||  |||||||||||||||||||||| |   |||||| |||   ||||||||||||| |||||    
T  1676880 ggtttagattgtttatgagatccattgagaatgctcttaagaggggtatttatagcccttcgtgggcttgtatttcgatgacttaagccccgagcaa 1676784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 1683408 - 1683312
Alignment:
Q  168 ggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaa 264  Q
    |||||| | |||||||||||| | ||||||||| ||  |||||||||||||||||||||| |   |||||| |||   ||||||||||||| |||||    
T  1683408 ggtttagattgtttatgagatccattgagaatgctcttaagaggggtatttatagcccttcgtgggcttgtatttcgatgacttaagccccgagcaa 1683312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 310
Target Start/End: Complemental strand, 11134451 - 11134277
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| |||| |||| ||||||||| | || ||||||| | ||| |||||| ||||| |||||| |||| ||||  | |||||||||||||  |||   ||    
T  11134451 tgtacttgctgtgagtacaataatcgtatatagggtt-atactatttatgtgatgccttgagactgattccaaaggtggtatttatagcctgttgtgggc 11134353  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagc 310  Q
    ||  |||   ||||||||||||||||| ||||| ||||||| |||||||  || |  ||||||| |||||||||||    
T  11134352 ttactttagtgtgacttaagccccaagtaagctgggttttaggtcttttgcctgacttctagatgcttctagaagc 11134277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 12327811 - 12327761
Alignment:
Q  339 gcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||||||| ||||||| ||| ||||||| |||||| ||||||||||||    
T  12327811 gcctaggcctctggagcccatctagagggcgtctaagcatttctagagggc 12327761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 23620866 - 23620788
Alignment:
Q  187 atgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaag 265  Q
    |||| |||||||  ||| ||| || ||||||||||| ||| || | |||||||||  ||||||||||||||||||||||    
T  23620866 atgccttgagaaaaatctcaatagcggtatttatagtcctatggaggcttgttttcgcgtgacttaagccccaagcaag 23620788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 50051309 - 50051350
Alignment:
Q  347 ctcaggagcccttctggagggcgcctaagcctttctagaggg 388  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  50051309 ctcaggagcccttctggaggacacctaaacctttctagaggg 50051350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 6e-54; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 135 - 385
Target Start/End: Complemental strand, 27649304 - 27649053
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| |||||||||||||||||||||||||||||||||| ||| |||||| |||| | | ||||||||||||| ||  |||||||||||||||||   ||    
T  27649304 tgtacttgcagtgaatacaataatagaatctagggtttagactctttatgtgatgttctcagaatgatcccaaaagtcgtatttatagccctttgtgggc 27649205  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaag 334  Q
    |||||||  |||||||||||| ||| ||||| | |   ||||||| |||||| |||||| |||| |||||||||||||||| ||||| |||||| | |||    
T  27649204 ttgttttcgcgtgacttaagctccacgcaagttggacattaagtcattttaccaagctccagatgcttctagaagctagttaaggcaacgcctctgaaag 27649105  T
Q  335 -gcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctaga 385  Q
     ||||||||| |||||| ||||||||||||| || |||||||||||||||||    
T  27649104 agcgcgcctaagcctcatgagcccttctggaaggtgcctaagcctttctaga 27649053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 150 - 389
Target Start/End: Complemental strand, 16696271 - 16696034
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    ||||||||| | |||||||||| | | |||||  ||||| | ||||||||||||||||| ||||||| |||||||| |||   |||||||||  ||||||    
T  16696271 tacaataattgtatctagggttaagattgttt--gagataccttgagaatgatcccaag-ggggtatctatagccccttgtgggcttgttttagcgtgac 16696175  T
Q  250 ttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaagg-cgcgcctaggcct 348  Q
    |||||| ||||||||||| || |||| |||||||||||    |||||||  ||||||||||| | |||||| ||| ||| |||||| ||||||||||| |    
T  16696174 ttaagctccaagcaagctgggctttaggtctttttacttgattctagatgtttctagaagctggctgaggcggcgtctctggaagggcgcgcctaggctt 16696075  T
Q  349 caggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  16696074 caggagcccttctggaaggcgcctaagcctttctagagggc 16696034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 150 - 424
Target Start/End: Complemental strand, 20568404 - 20568132
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    |||||||||| |||||||| |||| | ||||| | |||  | |||||||||||| |||  | ||||||||||||||||||   |||||||||||| ||||    
T  20568404 tacaataatataatctagg-tttagattgtttttcagacaccttgagaatgatctcaatggtggtatttatagccctttgtgggcttgtttttac-tgac 20568307  T
Q  250 ttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcct 348  Q
    ||||| ||||||||||   ||  ||| |||||||||||||||||||||| ||||||||||||||| || || ||||||| | || |||  ||||||| ||    
T  20568306 ttaaggcccaagcaagtcgggccttacgtctttttactaagctctagatgcttctagaagctagtcgaagcggcgcctctgaaagggcatgcctagg-ct 20568208  T
Q  349 caggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtccaaat 424  Q
    ||||||||| | || |||| || ||||| |||||||| ||||||||| |||| |||||| ||||||| ||||||||    
T  20568207 caggagcccatttgaagggtgcttaagcatttctagatggcattcgagcccttaggaatatattgacggtccaaat 20568132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 135 - 285
Target Start/End: Original strand, 26067053 - 26067203
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| |||| ||||||||||||||| |||||| |||||| |||||||||||||| | |||| |||||||| ||| | |||||||||| ||| | |   ||    
T  26067053 tgtacttgctgtgaatacaataatataatctatggtttagactgtttatgagattccttgataatgatccaaagggtggtatttataacccatggtgggc 26067152  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtcttttta 285  Q
    |||||||| ||||||||||||||||| ||||||||| |||| |||||||||    
T  26067153 ttgtttttgcgtgacttaagccccaaacaagctaggctttaggtcttttta 26067203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 29810332 - 29810257
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaaga 209  Q
    ||||| ||||||||| ||||||| |||||  ||||||||| ||||||| || ||||  ||||||||||||||||||    
T  29810332 ttgtacttgcagtgagtacaatattagaaattagggtttagactgtttttgtgatgtcttgagaatgatcccaaga 29810257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 25918649 - 25918564
Alignment:
Q  176 ctgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaag 261  Q
    ||||||||| ||||| |||||||||||||||||| |  ||||||||| ||||||    ||||||||  ||||||||||||| ||||    
T  25918649 ctgtttatgtgatgccttgagaatgatcccaagatgaatatttatagtcctttgtggacttgttttcgcgtgacttaagcctcaag 25918564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 28753243 - 28753186
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatg-ctttgagaatgatccca 206  Q
    ||||||||| | |||||||||||| | ||||||||||||| |||||||||||||||||    
T  28753243 tacaataatcgtatctagggtttagattgtttatgagatgtctttgagaatgatccca 28753186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 26067249 - 26067298
Alignment:
Q  339 gcctaggcctcaggagcccttctggagggcgcctaagcctttctagaggg 388  Q
    |||||||| ||||||||||||||||||| || |  |||||||||||||||    
T  26067249 gcctaggcttcaggagcccttctggaggacgtcgtagcctttctagaggg 26067298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 37551438 - 37551385
Alignment:
Q  176 ctgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttg 229  Q
    ||||||||| ||||| || ||||||||| ||| || ||||||||||||||||||    
T  37551438 ctgtttatgtgatgccttaagaatgatctcaatagtggtatttatagccctttg 37551385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 37606925 - 37606872
Alignment:
Q  176 ctgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttg 229  Q
    ||||||||| ||||| |||||||||||| ||| || ||||||||||| ||||||    
T  37606925 ctgtttatgtgatgccttgagaatgatctcaatagtggtatttatagtcctttg 37606872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 37779135 - 37779082
Alignment:
Q  176 ctgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttg 229  Q
    ||||||||| ||||| |||||||||||| ||| || ||||||||||| ||||||    
T  37779135 ctgtttatgtgatgccttgagaatgatctcaatagtggtatttatagtcctttg 37779082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 27073650 - 27073610
Alignment:
Q  337 gcgcctaggcctcaggagcccttctggagggcgcctaagcc 377  Q
    ||||| |||||||||||| ||||||||||||| ||||||||    
T  27073650 gcgcccaggcctcaggagtccttctggagggcacctaagcc 27073610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 134 - 421
Target Start/End: Original strand, 22224476 - 22224762
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaag 233  Q
    ||||| |||| |||| |||||||||||||||||||||| | ||||||| |||||||| ||||||||| || ||||||| ||||||||||||||  |  ||    
T  22224476 ttgtacttgcggtgagtacaataatagaatctagggtt-atactgtttttgagatgccttgagaatgctctcaagaggtgtatttatagccctccgtgag 22224574  T
Q  234 cttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa 333  Q
    |||| | |  |||||||||||| ||||||||| | ||  |||||||||||||||||||||||||| ||||||||||||||||||| | || |||| ||||    
T  22224575 cttgctctctcgtgacttaagctccaagcaagttgggccttaagtctttttactaagctctagatgcttctagaagctagttgagccggctcctctggaa 22224674  T
Q  334 -ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
     || || | ||||||||| |||   |||||||||  |||||||||||||||||||| ||| || |||| |||||| ||||||| |||||    
T  22224675 tggtgctcttaggcctcaagag-ttttctggaggatgcctaagcctttctagagggtatttgagcccttaggaatatattgacggtcca 22224762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 212 - 415
Target Start/End: Original strand, 51183718 - 51183921
Alignment:
Q  212 ggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagct 311  Q
    ||||||||||| ||||||   ||||||||||  |||||||||||||||| |||| | ||  ||||||| ||||||| ||||| |||| ||||||||||||    
T  51183718 ggtatttatagtcctttgcgggcttgtttttgtgtgacttaagccccaaacaagttgggccttaagtcattttactgagctccagatgcttctagaagct 51183817  T
Q  312 agttgaggcagcgcctcgggaa-ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgta 410  Q
    ||| ||| | ||| |||  ||| || | |||||||||| | ||| | ||||| |||||||| || ||||||||||||| |||||| |||| | |||| ||    
T  51183818 agtcgagccggcg-ctctagaagggtgtgcctaggccttacgagtcattctgaagggcgcccaaacctttctagagggtattcgagcccttaagaatata 51183916  T
Q  411 ttgac 415  Q
    |||||    
T  51183917 ttgac 51183921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 18041751 - 18041673
Alignment:
Q  148 aatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccct 226  Q
    |||||||||||||||||||||||||| |||||||||  ||| ||||||||||| || ||||| ||||||||||||||||    
T  18041751 aatacaataatagaatctagggtttagactgtttatccgattctttgagaatgctctcaagaagggtatttatagccct 18041673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 3089127 - 3089071
Alignment:
Q  336 cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcatt 392  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  3089127 cgcgcctaggccttaggagcccttccggagggcgcctaagcctttctagaaggcatt 3089071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 52909656 - 52909709
Alignment:
Q  339 gcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcatt 392  Q
    |||||||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  52909656 gcctaggcttcaggagcccttctagagggcgcctaagcctttctggagggcatt 52909709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 20194814 - 20194759
Alignment:
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| || ||||||||    
T  20194814 ggcgcgcctaggcctcaggagtccttccggagggcgcctaagccattttagagggc 20194759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 380
Target Start/End: Original strand, 14434193 - 14434385
Alignment:
Q  187 atgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttac 286  Q
    |||| ||||||||| ||  |||| ||||||||||||| ||| |   |||||||||| ||||||||||||||||| ||| ||  |  ||||||  ||||||    
T  14434193 atgccttgagaatgctcttaagatgggtatttatagctcttcgtgggcttgtttttccgtgacttaagccccaaacaa-ctttgccttaagtgattttac 14434291  T
Q  287 taagctctagatacttctagaagctagttgaggcagcgcctcgggaaggcgcgcctaggcctcaggagcccttctggagggcgcctaagccttt 380  Q
       | ||||||| |||||||||||| |||||||| ||| | ||||    | ||||||||| |||| ||||||||| || || ||||||||||||    
T  14434292 agtgttctagatgcttctagaagcttgttgaggcggcggcccgggggaacacgcctaggcttcagaagcccttctagaaggagcctaagccttt 14434385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 18036280 - 18036170
Alignment:
Q  152 caataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgactt 251  Q
    |||||||||||| ||||||| |||||||||||  ||||||||||||||| || || || || |||||||||| ||| |   |||||| |||  |||||||    
T  18036280 caataatagaatttagggtt-aaactgtttatccgatgctttgagaatgctctcatgaaggatatttatagcacttcgtgggcttgtattttggtgactt 18036182  T
Q  252 aagccccaagca 263  Q
    ||||| ||||||    
T  18036181 aagcctcaagca 18036170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 30510697 - 30510603
Alignment:
Q  322 gcgcctcgggaagg-cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgac 415  Q
    ||||||| |||||| ||| ||||||| ||||| |||| | ||||||||||||||| ||||||||| || |||||| ||||  ||||| |||||||    
T  30510697 gcgcctctggaagggcgcacctaggcttcaggtgcccctatggagggcgcctaagtctttctagatggtattcgagccctttggaatatattgac 30510603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 348
Target Start/End: Original strand, 6142216 - 6142332
Alignment:
Q  233 gcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcggga 332  Q
    ||||| |||| |||||||||||||||||||||    || ||||||||||| | | ||||||||||  ||||||||||||   ||||||  |||| | |||    
T  6142216 gcttggtttttcgtgacttaagccccaagcaacgagggctttaagtctttctgccaagctctagaggcttctagaagctgactgaggcgacgcccctgga 6142315  T
Q  333 agg-cgcgcctaggcct 348  Q
    ||| |||||||||||||    
T  6142316 aggacgcgcctaggcct 6142332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 52909459 - 52909550
Alignment:
Q  133 attgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    |||||| ||||||||| |||||||    || ||||||||||  ||||||| |  |||| ||||||||| || ||||||||||||||||||||    
T  52909459 attgtacttgcagtgagtacaatatctaaaactagggtttagtctgtttaggtcatgccttgagaatgctctcaagaggggtatttatagcc 52909550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 40609072 - 40608982
Alignment:
Q  133 attgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagc 223  Q
    |||||| ||||||||| |||||||   ||| |||||||   ||||||||| |  ||| |||||||||| || |||||||||||||||||||    
T  40609072 attgtacttgcagtgagtacaatatctgaaactagggtcagaactgtttaggtcatggtttgagaatgttctcaagaggggtatttatagc 40608982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 52909857 - 52909943
Alignment:
Q  336 cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtccaa 422  Q
    ||||||||||| |||| |||||||   ||||| |||||||||||||| ||||||||| |  |||| ||||||  |||||| ||||||    
T  52909857 cgcgcctaggcttcagaagcccttgcagagggtgcctaagcctttctggagggcatttgtgcccttaggaatagattgacggtccaa 52909943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 19453895 - 19453939
Alignment:
Q  180 ttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    ||||||||||| |||||| |||||||||| | |||||||||||||    
T  19453895 ttatgagatgccttgagactgatcccaagggtggtatttatagcc 19453939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 134 - 415
Target Start/End: Original strand, 2591735 - 2592015
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaag 233  Q
    ||||| ||||||||| |||||||||||||||||||||| |  |||||| |||||||| |||| |||| || ||||||| |||| |||||||||  |  |     
T  2591735 ttgtacttgcagtgagtacaataatagaatctagggtt-attctgtttttgagatgccttgacaatgctctcaagaggtgtatatatagccctccgtgaa 2591833  T
Q  234 cttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa 333  Q
    ||||||||  |  ||||||||| |||| |||| |  |  |||||||||||||||||||||||||| ||| ||||||||||||||||| ||  |||  |||    
T  2591834 cttgttttctcaggacttaagctccaaacaagttgtgccttaagtctttttactaagctctagatgcttttagaagctagttgaggcggcatctctagaa 2591933  T
Q  334 -ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgac 415  Q
     || ||||||||||||||||||   ||||||||| ||||||||||||||||||||| ||| || |||| |||||| |||||||    
T  2591934 gggtgcgcctaggcctcaggag-ttttctggaggacgcctaagcctttctagagggtatttgagcccttaggaatatattgac 2592015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 279 - 422
Target Start/End: Complemental strand, 18298920 - 18298776
Alignment:
Q  279 ctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaagg-cgcgcctaggcctcaggagcccttctggagggcgcctaagcc 377  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| |||| | |||| |||| |||||||||||||||||||||||||| ||||| |||     
T  18298920 ctttttactaagctctagatgcttctagaagctagttgaggtagcacctctgaaagggcgcgtctaggcctcaggagcccttctggaggacgcctgagct 18298821  T
Q  378 tttctagagggcattcgaaccctcaggaatgtattgactgtccaa 422  Q
    |||||||||||||||||| | || |||||| ||||||| ||||||    
T  18298820 tttctagagggcattcgagctcttaggaatatattgacggtccaa 18298776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 134 - 413
Target Start/End: Original strand, 10301899 - 10302176
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaag 233  Q
    ||||| ||||||||| |||||||||||||| | ||  ||| ||||||| |||||||| ||||||||| || ||||||| ||||||||||| ||  |  ||    
T  10301899 ttgtacttgcagtgagtacaataatagaatatggg--ttatactgtttttgagatgccttgagaatgctctcaagaggtgtatttatagctctccgtgag 10301996  T
Q  234 cttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa 333  Q
     |||||||  |||||||||| | ||||||||| | ||  | |||| |||||| |||||||||||| |||||||||| ||||||||||  | ||||  |||    
T  10301997 tttgttttctcgtgacttaatctccaagcaagttgggcctcaagtatttttattaagctctagatgcttctagaagatagttgaggcgactcctctcgaa 10302096  T
Q  334 -ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattg 413  Q
     || |||||| ||||||| |||   ||||||||| ||||||||||||||||||||| ||| || |||| |||||| |||||    
T  10302097 gggtgcgcctcggcctcaagag-ttttctggaggacgcctaagcctttctagagggtatttgagcccttaggaatatattg 10302176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 17345807 - 17345900
Alignment:
Q  131 atattgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagcc 224  Q
    |||||||| ||||||||| ||||||||| | |||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  17345807 atattgtacttgcagtgagtacaataattgtatctagggtttagactgtttatgagatgccttgggaatgatcccaagagggatatttatagcc 17345900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 382
Target Start/End: Original strand, 4157690 - 4157936
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagc 234  Q
    |||| ||||||||| |||||||||||||| || |||||| | |||||||| ||||| ||||||||| || ||||||| ||||||||||||||  |   ||    
T  4157690 tgtacttgcagtgagtacaataatagaatttaaggtttagattgtttatgtgatgccttgagaatgctctcaagaggtgtatttatagccctccgtgggc 4157789  T
Q  235 ttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaag 334  Q
    ||| |||| |||||   || ||||||| ||  | || |||||||||||||||  || ||||||| |||||||||| ||||||||||  ||||||  | ||    
T  4157790 ttggttttccgtgatgaaaaccccaagtaatgtgggctttaagtctttttacagagttctagatgcttctagaagttagttgaggcgacgcctcttggag 4157889  T
Q  335 gcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttct 382  Q
    | ||| ||| | || | |||| |||||||||||||||| | |||||||    
T  4157890 g-gcgtctaaggcttatgagctcttctggagggcgccttaacctttct 4157936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 4154285 - 4154420
Alignment:
Q  272 tttaagtctttttactaagctctagatacttctagaagctagttgaggcagcgcctcgggaa-ggcgcgcctaggcctcaggagcccttctggagggcgc 370  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||| || ||| |||  ||| |||||||||| |||| |||||||||| ||||||| ||    
T  4154285 tttaagtctttttactaagttctagatgcttctagaagttagttgacgcggcgtctctagaagggcgcgcctaagccttaggagcccttatggagggtgc 4154384  T
Q  371 ctaagcctttctagagggcattcgaaccctcaggaat 407  Q
    || | | |||||||||||| ||| | |||| ||||||    
T  4154385 ctta-catttctagagggccttcaagcccttaggaat 4154420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 18299031 - 18298937
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttg 229  Q
    |||| ||||| ||| |||||||||||||||||||||||| ||| |||||||||||| |||||||| ||   ||| | ||||||||||||||||||    
T  18299031 tgtacttgcattgagtacaataatagaatctagggtttagactatttatgagatgccttgagaataattttaagggtggtatttatagccctttg 18298937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 192 - 389
Target Start/End: Original strand, 12257272 - 12257464
Alignment:
Q  192 ttgagaatgatcccaagaggggtatttatagc-cctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaag 290  Q
    ||||||||||||||||||| |||||||||||| ||||||   ||| |||    |||||||||||| |||||||| || ||||||| ||||||||||        
T  12257272 ttgagaatgatcccaagagtggtatttatagctcctttgtgggctggttacggcgtgacttaagctccaagcaaactgggttttaggtctttttac---- 12257367  T
Q  291 ctctagatacttctagaagctagttgaggcagcgcctcgggaaggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
      ||  || |||||||| |||   | |||| |||| || | | ||| ||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||    
T  12257368 --ctgcatgcttctagatgctgactaaggcggcgcatctgaagggcacgcctagtcctcaagagcccttccggagggcgcctgagcctttctagagggc 12257464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 15583010 - 15582951
Alignment:
Q  362 ggagggcgcctaagcctttctagagggcattcgaaccctcaggaatgtattgactgtcca 421  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  15583010 ggagggcgccttagcctttctagagggcattcgaacccttaggaatatattgacagtcca 15582951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 18310633 - 18310552
Alignment:
Q  281 ttttactaagctctagatacttctagaagctagttgaggcagcgcctc-gggaaggcgcgcctaggcctcaggagcccttct 361  Q
    |||||||||||||||||| ||| |||||||||||||| |  ||||||| || |||| || ||||||||||||||||||||||    
T  18310633 ttttactaagctctagatgcttatagaagctagttgatgtggcgcctctggaaaggtgctcctaggcctcaggagcccttct 18310552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 288
Target Start/End: Complemental strand, 15583155 - 15583011
Alignment:
Q  144 agtgaatacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgttttta 243  Q
    ||||| ||||||| ||||||||||| |||| |||||||||| ||||  ||||||||  ||  |||||| |||||||| | |||  |   ||||| ||||     
T  15583155 agtgagtacaatattagaatctaggctttagactgtttatgtgatggcttgagaattctcttaagaggtgtatttattgtcctccgtgggcttgattttt 15583056  T
Q  244 cgtgacttaagccccaagcaagctaggttttaagtctttttacta 288  Q
    |||||||||||||||||| ||  | || || ||||||||||||||    
T  15583055 cgtgacttaagccccaagtaatgtgggcttcaagtctttttacta 15583011  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 18310751 - 18310698
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggtttaaactgtttatgagat 188  Q
    |||| ||| ||||| |||||||||| |||||||||||||  |||||||||||||    
T  18310751 tgtacttgtagtgagtacaataataaaatctagggtttagcctgtttatgagat 18310698  T

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Target: scaffold0044 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 58867 - 58756
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttgaaagcttgtttttacgtgac 249  Q
    |||||||| ||||| || |||||| | ||||||| |||||| | |||||||||||||||||||||||||||||||||| |  | ||||| ||| ||||||    
T  58867 tacaataagagaatatatggtttagattgtttatcagatgcctagagaatgatcccaagaggggtatttatagcccttcgtgaacttgtattttcgtgac 58768  T
Q  250 ttaagccccaag 261  Q
    ||| ||||||||    
T  58767 ttaggccccaag 58756  T

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Target: scaffold0102 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 25502 - 25423
Alignment:
Q  150 tacaataatagaatctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttatagccctttg 229  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| ||    |||||||||| |||||||    
T  25502 tacaataaaagaatctagggtttagactgtttatgagatgctttgataatgatcctaatgatggtatttataaccctttg 25423  T

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Target: scaffold0102; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 25310 - 25262
Alignment:
Q  341 ctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    |||| |||||||||| |||||||||||||||| ||||||| ||||||||    
T  25310 ctagtcctcaggagcacttctggagggcgcctgagcctttatagagggc 25262  T

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Target: scaffold0474 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 407
Target Start/End: Complemental strand, 6533 - 6339
Alignment:
Q  213 gtatttatagccctttgaaagcttgtttttacgtgacttaagccccaagcaagctaggttttaagtctttttactaagctctagatacttctagaagcta 312  Q
    ||||||||||||| |||   |||||||||  |||||||||| ||||||||||  | ||  ||||||| ||||||    |||||||  |||||||||||      
T  6533 gtatttatagccccttgtgggcttgttttctcgtgacttaa-ccccaagcaacatggggcttaagtcattttacagttctctagaagcttctagaagcct 6435  T
Q  313 gttgaggcagcgcctcgggaagg-cgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgaaccctcaggaat 407  Q
    |||||||| || || | ||| |  ||| ||||||| | ||||||||||||| ||||||||||||  ||||||||||| |||||  |||| ||||||    
T  6434 gttgaggcggcaccccaggaggaacgcacctaggctttaggagcccttctgaagggcgcctaagtatttctagagggaattcgtgcccttaggaat 6339  T

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Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 19151 - 19096
Alignment:
Q  334 ggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggc 389  Q
    |||||| |||||||||| |||||||||||||||||| || | ||||||||||||||    
T  19151 ggcgcgtctaggcctcatgagcccttctggagggcgtctgaacctttctagagggc 19096  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 32205 - 32117
Alignment:
Q  134 ttgtatttgcagtgaatacaataatagaat-ctagggtttaaactgtttatgagatgctttgagaatgatcccaagaggggtatttata 221  Q
    ||||| ||||||||| ||||||| |||||  ||||| |||||| ||||||||||||| ||||||| |||||  ||||| ||||| ||||    
T  32205 ttgtacttgcagtgagtacaatactagaaaactaggatttaaattgtttatgagatgttttgagagtgatcttaagagtggtatctata 32117  T

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Target: scaffold0374 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 12020 - 11966
Alignment:
Q  340 cctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcg 394  Q
    ||||||| ||||||| ||||||| |||||| |||||||||||| |||| ||||||    
T  12020 cctaggcttcaggagtccttctgaagggcgtctaagcctttctggaggccattcg 11966  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 121169 - 121080
Alignment:
Q  135 tgtatttgcagtgaatacaataatagaatctagggttta-aactgtttatgagatgctttgagaatgatcccaagaggggtatttatagc 223  Q
    |||| ||||||||| |||||||   ||| |||||||||| |||||| || |  |||| |||||||||||| || ||||||||||||||||    
T  121169 tgtacttgcagtgagtacaatatctgaaactagggtttagaactgtgtaggtcatgccttgagaatgatctcatgaggggtatttatagc 121080  T

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