View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6129_low_3 (Length: 455)
Name: NF6129_low_3
Description: NF6129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6129_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 276 - 440
Target Start/End: Original strand, 39517976 - 39518138
Alignment:
| Q |
276 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagccttggattcaggtg |
375 |
Q |
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| T |
39517976 |
tcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaagccttggattcaggtg |
39518075 |
T |
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| Q |
376 |
ctatccccattacacaggaacactcataagacctactgtcccagcaacatagtaacaataaaggt |
440 |
Q |
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| T |
39518076 |
ctatccccatt--acaggaacactcataagacctactgttccagcaacatagtaacaataaaggt |
39518138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 46 - 273
Target Start/End: Original strand, 39517040 - 39517277
Alignment:
| Q |
46 |
tcaatagaatctagtatctgcctatatagcaacaaagctgccgatacaggccatctactagcagaact------------------ttctgcctcatcaa |
127 |
Q |
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| T |
39517040 |
tcaatagaatctaatatctgcctatataacaacaatgctgcccatacaggccatctactagcagaactgagctctgaaacacccttttctgcttcatcaa |
39517139 |
T |
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| Q |
128 |
agaacattcttgccctttttatttttatttgtcccttcatgaaatttctctatttgtctgttacttttccacgtacaatgtcttcatatctgataggcca |
227 |
Q |
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| T |
39517140 |
aaaacattcttgccctttt------tatttgtcccttcatgaaatttctccatttgtctgttacttttccacgcataatgtcttc--atctgatatgcca |
39517231 |
T |
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| Q |
228 |
gcttgtgctagctcatcttgagggagatacgctcttcctcttctag |
273 |
Q |
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| T |
39517232 |
gcttgtgctagctcatcttgagggagatacactcttcctcttctag |
39517277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 32687438 - 32687516
Alignment:
| Q |
279 |
tctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttg |
357 |
Q |
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| T |
32687438 |
tctccaacatctctgagtatgttggtaagctgatttgcaattcccaaggccaaggcagcattgtatacactctctgttg |
32687516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 440
Target Start/End: Original strand, 17380468 - 17380630
Alignment:
| Q |
276 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagccttggattcaggtg |
375 |
Q |
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| T |
17380468 |
tcttctccaacgtctctaagtatgttggtaagttgattagcaatgccaagtgccaatgcagcattgtagatgctttcagttgaagcttttgattgtggtt |
17380567 |
T |
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| Q |
376 |
ctatccccattacacaggaacactcataagacctactgtcccagcaacatagtaacaataaaggt |
440 |
Q |
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| T |
17380568 |
ctatgcccatt--acaggaacactcataaggcccacagtcccagcaacatagtagcaatataggt |
17380630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 17379934 - 17380001
Alignment:
| Q |
46 |
tcaatagaatctagtatctgcctatatagcaacaaagctgccgatacaggccatctactagcagaact |
113 |
Q |
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| T |
17379934 |
tcaatagaatctaatatctgcctatacaacagcaaagatgcccaaacaggccatctactagctgaact |
17380001 |
T |
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