View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6129_low_8 (Length: 242)
Name: NF6129_low_8
Description: NF6129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6129_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 47546320 - 47546096
Alignment:
| Q |
1 |
ttgttactgatattcttgactcttagtatcagcaagcataatggagtggaacattgaagtgatttgcaatagttactaacgaattataccggataagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47546320 |
ttgttactgatattcttgactcttagtatcagcaagcataatggagtggaacattgaagtgatttgcaatagttactaacgaattataccggataagatg |
47546221 |
T |
|
| Q |
101 |
agattttggcatgtgcc-aaaaagtgtgaagaagaagaaaaaattacataaggttcaaatgctaactagaatttccaccaactttatgtcagaatcagtt |
199 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47546220 |
agattttggcacgtgccaaaaaagtgt---gaagaagaaaaaattacataaggttcaaatgctaactagaatttccaccaactttatgtcagaatcagtt |
47546124 |
T |
|
| Q |
200 |
accatttctggagatacaagaggcaaat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47546123 |
accatttctggagatacaagaggcaaat |
47546096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 47538990 - 47538923
Alignment:
| Q |
9 |
gatattcttgactcttagtatcagcaagcataatggagtggaacattgaagtgatttgcaatagttac |
76 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||| |||||| | ||||||||||| ||||||| |
|
|
| T |
47538990 |
gatatacttgactcttactgtcagcaagcataatggagttgaacatgggagtgatttgcagtagttac |
47538923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 47538926 - 47538852
Alignment:
| Q |
143 |
ttacataaggttcaaatgctaactagaatttccaccaactttatgtcagaatcagttaccatttctggagataca |
217 |
Q |
| |
|
||||||||| | |||||| |||||||| ||||||| | |||||||||||||||||||||| || |||||||||| |
|
|
| T |
47538926 |
ttacataagttacaaatggtaactagagtttccactatctttatgtcagaatcagttacctcttttggagataca |
47538852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University