View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6129_low_9 (Length: 226)
Name: NF6129_low_9
Description: NF6129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6129_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 16024098 - 16023907
Alignment:
| Q |
14 |
cagagagggtgatggaagcgagtttagccacaaaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtccctc |
113 |
Q |
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| T |
16024098 |
cagagagggttatggaaacgagtttagccacaaaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctc |
16023999 |
T |
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| Q |
114 |
ggatccagcagcgataaggctgagaacaacttgaagtgatagcggcgaaaacacgatgttattgtctgattgttttgaaaagagttgtttga |
205 |
Q |
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| T |
16023998 |
ggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttga |
16023907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 5155346 - 5155253
Alignment:
| Q |
87 |
gagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggcgaaaacacgatgttattgtct |
180 |
Q |
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| T |
5155346 |
gagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtct |
5155253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 46469809 - 46469651
Alignment:
| Q |
46 |
aaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt |
145 |
Q |
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||||||||||||| | | | |||| ||| || ||||| | |||||| ||||||||||| | ||||| || ||||||||| || | |||| | ||||| |
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| T |
46469809 |
aaggagttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataactt |
46469710 |
T |
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| Q |
146 |
gaagtgatagcggcgaaaacacgatgttattgtctgattgttttgaaaagagttgtttg |
204 |
Q |
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| T |
46469709 |
ggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttg |
46469651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 4582491 - 4582644
Alignment:
| Q |
44 |
caaaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaac |
143 |
Q |
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||||||||||||||| || || |||| |||| | ||||| | ||||||||||| | ||| ||||| || || ||||||||||| | |||||| |||| |
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| T |
4582491 |
caaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaac |
4582590 |
T |
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| Q |
144 |
ttgaagtgatagcggcgaaaacacgatgttattgtctgattgttttgaaaagag |
197 |
Q |
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| T |
4582591 |
ttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagag |
4582644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 46478361 - 46478252
Alignment:
| Q |
94 |
tgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggcgaaaacacgatgttattgtctgattgttttgaaa |
193 |
Q |
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|||||||| || || ||||| || |||| |||||| | || || |||||||| ||||| || || |||||||||||||| |||||||||| ||| || | |
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| T |
46478361 |
tgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaacttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggaga |
46478262 |
T |
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| Q |
194 |
agagttgttt |
203 |
Q |
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|||| ||||| |
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| T |
46478261 |
agagatgttt |
46478252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 20143638 - 20143496
Alignment:
| Q |
46 |
aaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt |
145 |
Q |
| |
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|||||||| |||| |||||| |||| | |||| ||||| | || ||| ||||||||||| || | || || |||||||||||||||||||| |||| || |
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| T |
20143638 |
aaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaattt |
20143539 |
T |
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| Q |
146 |
gaagtgatagcggcgaaaacacgatgttattgtctgattgttt |
188 |
Q |
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| T |
20143538 |
ggagtgatagtggcgaaaacacgatgttcttgtctgattgttt |
20143496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 20169872 - 20170014
Alignment:
| Q |
46 |
aaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt |
145 |
Q |
| |
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||||| ||||||| |||||| |||| | | || ||||| | || ||| ||||||| ||| || || || || |||| ||| ||||||||||| |||| || |
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| T |
20169872 |
aaggaattgagatgattggtggatttgaaacggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagcacaattt |
20169971 |
T |
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| Q |
146 |
gaagtgatagcggcgaaaacacgatgttattgtctgattgttt |
188 |
Q |
| |
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|||||||||| || |||||||||| ||| |||||||||||||| |
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| T |
20169972 |
gaagtgatagtggtgaaaacacgacgtttttgtctgattgttt |
20170014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 20154499 - 20154401
Alignment:
| Q |
90 |
aagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggcgaaaacacgatgttattgtctgattgttt |
188 |
Q |
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||||||||||||||| || || || || ||||||||| | ||||||| |||||||| ||||| | ||||||||||| ||||| |||||||||||||| |
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| T |
20154499 |
aagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttgtctgattgttt |
20154401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 9677631 - 9677789
Alignment:
| Q |
46 |
aaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt |
145 |
Q |
| |
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||||||||||||| || | | |||| | | || ||||| | ||||||||||||||| || || ||||| || ||||||||||| | ||||||||||||| |
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| T |
9677631 |
aaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaactt |
9677730 |
T |
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| Q |
146 |
gaagtgatagcggcgaaaacacgatgttattgtctgattgttttgaaaagagttgtttg |
204 |
Q |
| |
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| || || | || ||||| |||| ||| |||||||||| |||||| ||||| |||||| |
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| T |
9677731 |
ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttg |
9677789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 9693414 - 9693530
Alignment:
| Q |
88 |
agaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggcgaaaacacgatgttattgtctgattgtt |
187 |
Q |
| |
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|||||||||||||| || || || || || ||| ||||||| | ||||||||||||||| || || | || ||||| |||| || |||||||||| || |
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| T |
9693414 |
agaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattcttgtctgattctt |
9693513 |
T |
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| Q |
188 |
ttgaaaagagttgtttg |
204 |
Q |
| |
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|||| ||||| |||||| |
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| T |
9693514 |
ttgagaagagatgtttg |
9693530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 35160596 - 35160479
Alignment:
| Q |
88 |
agaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggcgaaaacacgatgttattgtctgattgtt |
187 |
Q |
| |
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||||||||||||||||| | ||||| || ||||||| ||| | |||||| |||||||| || || | ||||||||||||||||| || ||||||| || |
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| T |
35160596 |
agaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctt |
35160497 |
T |
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| Q |
188 |
ttgaaaagagttgtttga |
205 |
Q |
| |
|
| || ||||| ||||||| |
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| T |
35160496 |
tggagaagagatgtttga |
35160479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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