View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6130_low_1 (Length: 353)
Name: NF6130_low_1
Description: NF6130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6130_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 34869894 - 34869569
Alignment:
| Q |
10 |
catcatcatcattagcattttcattaccggtaagtactactacatcttattatatatagtcttaaaatgtaagatatcactgaaaacagtgtcctctttc |
109 |
Q |
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| T |
34869894 |
catcatcattattagcattttcattaccggtaagtactactacatcttattatata--gtcttaaaatgtaagatatcactgaaaacagtgtcctctttc |
34869797 |
T |
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| Q |
110 |
tgcaggactaacaacaaaaacagactcaatcggaataaactatggtcaaatagcaaacaacctaccatcaccagaaaacgtagtaaccctaataaaatgc |
209 |
Q |
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| T |
34869796 |
tgcaggactaacaacaaaaacagactcaatcggaataaactatggtcaaatagcaaacaacctaccatcaccagaaaacgtagtaaccctaataaaatgc |
34869697 |
T |
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| Q |
210 |
attggagcaacaaaagtaaaactctacgacgcagatccaaaagttctcaaagctttcgccaacactggtatagaattcatggtagggcttggaaatgaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34869696 |
attggagcaacaaaagtaaaactctacgacgcagatccaaaagttctcaaagctttcgccaacactggtatagaattcatggtagggcttggaaatgaat |
34869597 |
T |
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| Q |
310 |
atctctccaaaatgaaagaccctaaaca |
337 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
34869596 |
atctctccaaaatgaaagaccctaaaca |
34869569 |
T |
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