View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6130_low_2 (Length: 351)
Name: NF6130_low_2
Description: NF6130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6130_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47546323 - 47546666
Alignment:
| Q |
1 |
ttcctacacttgacctgtttcaaaaaataaaattgtattaaggactaattttagcacaagtcggtgcatgttttttattaacggtaagattgtcaaaatc |
100 |
Q |
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| T |
47546323 |
ttcctacacttgacctgtttcaaaaaataaaattgtattaaggactaatt--agcacaagtcggtacatgtttttgattaacggtaagattgtcaaaatc |
47546420 |
T |
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| Q |
101 |
aagatgaactatcgtgagttcgtattttgccaaactcacatttaatctaaatatacacttgaaagcataaaataattgagttatataagagttgagtctt |
200 |
Q |
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| T |
47546421 |
aagatgaactatcgtgagttcgtagtttgcaaaactcacatttaatctaaatatacacttgaaagcataaaataattgagttatataagagttgagtctt |
47546520 |
T |
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| Q |
201 |
acaatgtggcaaacacaagaagaacttttttagggtcaagaagccacgaagaagatcgtccaaaactacttcttcttgttatagatttgttttctgcgtt |
300 |
Q |
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| T |
47546521 |
acaatgtggcaaacacaagaagaacttttttagggtcaagaagccatgaagaagatcgtccaaaactacttcttcttgttatagatttgttttctgcgtt |
47546620 |
T |
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| Q |
301 |
ggtgttacacatgttactagctgttgtgacagtaatttgatgatgt |
346 |
Q |
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| T |
47546621 |
ggtgttacacatgttactagctgttgtgacagtaatttgatgatgt |
47546666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 47540234 - 47540308
Alignment:
| Q |
220 |
aagaacttttttagggtcaagaagccacgaagaagatcgtccaaaactacttcttcttgttatagatttgttttc |
294 |
Q |
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||||||||||||||||||||| || || |||||||| ||||||||||||||||| | | ||||| |||||||||| |
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| T |
47540234 |
aagaacttttttagggtcaagtagtcaggaagaagaacgtccaaaactacttctccatcttatacatttgttttc |
47540308 |
T |
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