View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6130_low_4 (Length: 274)
Name: NF6130_low_4
Description: NF6130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6130_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 46107633 - 46107878
Alignment:
| Q |
8 |
gacatcatcacaaaacaccaaaaattaaacatgatttctcttgttaattttctctcacattaagtattaagggaatat--ataataggttttcctcctct |
105 |
Q |
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| T |
46107633 |
gacaccatcacaaaacaccaaaaattaaacatgatttctcttgttaattttctttcacattaagtattaagggaatatatataataggttttcctcctct |
46107732 |
T |
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| Q |
106 |
cacttaattttggctacatcatcaattttgatttaaaggcacagccgccagaagtaaggacaatgacagtctcattcccgaacactctcccaaaagccct |
205 |
Q |
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| T |
46107733 |
cacttaattttggctacatcatcaattttgatttaaaggcacagccgccagaagtaaggacaatgacagtctcattcccgaacactctcccaaaagccct |
46107832 |
T |
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| Q |
206 |
gcatcacgtggaatccttttgttgttcgttctgccatccctagcac |
251 |
Q |
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| T |
46107833 |
gcatcacgtggaatccttttgttgttcgttctgccatccctagcac |
46107878 |
T |
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Back To:
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 22539469 - 22539378
Alignment:
| Q |
140 |
aaaggcacagccgccagaagtaaggacaatgacagtctcattcccgaacactctcccaaaagccctgcatcacgtggaatccttttgttgtt |
231 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| | || |||| | |||| || ||||||||||||| || | ||||||| |
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| T |
22539469 |
aaaggcacagccgccacaagtaaggacaatgacagtcccattcttgtactctcttcataaaggcccgcatcacgtggaaaccatctgttgtt |
22539378 |
T |
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