View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6130_low_5 (Length: 260)
Name: NF6130_low_5
Description: NF6130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6130_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 21902889 - 21902708
Alignment:
| Q |
1 |
aggtagctggattgtagccacttggaatagggggacaccagtgattccctgcatagcagataggaaaacaaacaaaaatataatcgtaggaaagcgcact |
100 |
Q |
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| T |
21902889 |
aggtagctggattgtagccacttggaatagggggacaccagtgattccctgcagagcagataggaaaacaaacaaaaatataatcgtaggaaagcgcact |
21902790 |
T |
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| Q |
101 |
tgtattctgacatttgtttcagaaaaagaaatacaaatgaagaagtaattaagagatatatagaaaaatgttgtgggagagg |
182 |
Q |
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| T |
21902789 |
tgtattctgacatttgtttcagaaaaagaaatacaaatgaagaagtaattaagagatatatagaaaaatgttgtgggagagg |
21902708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 21902696 - 21902612
Alignment:
| Q |
170 |
gttgtgggagaggatccaaatccatgttgaactactctgatcatggatccttttagtaaaagctagaaatgccgagaataatcta |
254 |
Q |
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| T |
21902696 |
gttgtgggggaggatccaaatccatgtagaactactctgatcatggatccttttagtaaaagctagaaatgccgagaagaatcta |
21902612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 29778808 - 29778673
Alignment:
| Q |
1 |
aggtagctggattgtagccacttggaataggggg-acaccagtgattccctgcatagcagataggaaaacaaacaaaaatataatcgtaggaaagcgcac |
99 |
Q |
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| T |
29778808 |
aggtagctggattgtagccacttggaataggggggacaccagtgattccctgcagagcagataggaaaacaaccaaaagtataatcgcaggaaagcgcac |
29778709 |
T |
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| Q |
100 |
ttgtattctgacatttgtttcagaaaaagaaataca |
135 |
Q |
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| T |
29778708 |
ttttattctgacatttgtttcagaataagaaataca |
29778673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 29778277 - 29778194
Alignment:
| Q |
170 |
gttgtgggagaggatccaaatccatgttgaactactctgatcatggatccttttagtaaaagctagaaatgccgagaataatct |
253 |
Q |
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| T |
29778277 |
gttgggggagaggatccaaatccatgtagaactactccgatcatggctccttttagtaaaatctagaaatgccgtgaagaatct |
29778194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 29778325 - 29778289
Alignment:
| Q |
146 |
taattaagagatatatagaaaaatgttgtgggagagg |
182 |
Q |
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| T |
29778325 |
taattaagagatataaagaaaaatgttgtgggagagg |
29778289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 29431220 - 29431187
Alignment:
| Q |
160 |
atagaaaaatgttgtgggagaggatccaaatcca |
193 |
Q |
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| T |
29431220 |
atagaaaaatgttgtgggagaggattcaaatcca |
29431187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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